Co-expression analysis

Gene ID PtpAffx.49713.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g06230: ATMKK8 (HF=6e-2)
Module size 6 genes
NF 0.60
%ile 90.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.85PtpAffx.49713.1.A1_atCV273728--6e-2At3g06230ATMKK8O.I.H.G.S.X.
0.9199.20.85PtpAffx.221049.1.S1_atpmrna37606hypothetical protein-6e-1At1g52440-O.I.H.G.S.X.
0.7794.90.85PtpAffx.42039.1.A1_atDN487942--5e+0At4g02360unknown proteinO.I.H.G.S.X.
0.5078.60.86PtpAffx.203723.1.S1_x_atpmrna7361hypothetical protein-2e+0At4g30380EXLB2 (EXPANSIN-LIKE B2 PRECURSOR)O.I.H.G.S.X.
0.3661.60.84PtpAffx.219260.1.S1_atpmrna35126hypothetical protein-7e+0At5g44310late embryogenesis abundant domain-containing protein / LEA domain-containing proteinO.I.H.G.S.X.
0.3153.70.86PtpAffx.22794.1.S1_atDN487129--2e+0At1g67540unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.099.4GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.396.9GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.794.7GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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