Co-expression analysis

Gene ID	PtpAffx.49713.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g06230: ATMKK8 (HF=6e-2)
Module size	6 genes
NF	0.60
%ile	90.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.85	PtpAffx.49713.1.A1_at	CV273728	-	-	6e-2	At3g06230	ATMKK8	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.85	PtpAffx.221049.1.S1_at	pmrna37606	hypothetical protein	-	6e-1	At1g52440	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.85	PtpAffx.42039.1.A1_at	DN487942	-	-	5e+0	At4g02360	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.86	PtpAffx.203723.1.S1_x_at	pmrna7361	hypothetical protein	-	2e+0	At4g30380	EXLB2 (EXPANSIN-LIKE B2 PRECURSOR)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.84	PtpAffx.219260.1.S1_at	pmrna35126	hypothetical protein	-	7e+0	At5g44310	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.86	PtpAffx.22794.1.S1_at	DN487129	-	-	2e+0	At1g67540	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.0	99.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.3	96.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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