Co-expression analysis

Gene ID PtpAffx.4889.5.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g62930: glutaredoxin family protein (HF=3e-5)
Module size 6 genes
NF 0.32
%ile 56.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7393.60.82PtpAffx.4889.5.A1_atCV267649--3e-5At3g62930glutaredoxin family proteinO.I.H.G.S.X.
0.3661.60.82Ptp.670.1.A1_atCK087317hypothetical protein-6e-1At5g14740CA2 (CARBONIC ANHYDRASE 2)O.I.H.G.S.X.
0.3153.70.85PtpAffx.206762.1.S1_atpmrna13424--3e-2At1g80330GA3OX4 (GIBBERELLIN 3-OXIDASE 4)O.I.H.G.S.X.
0.3153.70.87PtpAffx.147163.1.A1_atCV267314hypothetical protein-4e-1At4g23260ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseO.I.H.G.S.X.
0.2543.60.84PtpAffx.249.353.A1_atCV273034--5e-1At2g04070antiporter/ drug transporter/ transporterO.I.H.G.S.X.
0.2034.60.77PtpAffx.21178.1.S1_atBU887045hypothetical protein-1e+0At5g61210SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4067.00.83PtpAffx.223136.1.S1_atpmrna40986hypothetical protein-5e-18At1g49050aspartyl protease family proteinO.I.H.G.S.X.
0.3964.60.77PtpAffx.10505.1.S1_atCV241843--7e-5At4g10265wound-responsive protein, putativeO.I.H.G.S.X.
0.3153.70.85PtpAffx.95180.1.S1_atCA824276--2e-2At1g26740structural constituent of ribosomeO.I.H.G.S.X.
0.2950.50.84PtpAffx.202897.1.S1_atpmrna5733hypothetical protein-3e-6At3g13980unknown proteinO.I.H.G.S.X.
0.2034.60.85PtpAffx.152255.1.S1_atCV274461--4e-60At1g52980GTP-binding family proteinO.I.H.G.S.X.
0.1932.70.83PtpAffx.95850.1.A1_atCV230444hypothetical protein-4e-1At5g25560zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.1729.10.79PtpAffx.224455.1.S1_atpmrna43009hypothetical protein-1e-11At1g08440-O.I.H.G.S.X.
0.1729.10.80PtpAffx.218983.1.S1_x_atpmrna34757hypothetical protein-3e-4At5g12260-O.I.H.G.S.X.
0.1525.30.87PtpAffx.125515.1.S1_atCX173846--8e+0At4g16410unknown proteinO.I.H.G.S.X.
0.1423.50.84PtpAffx.219499.1.S1_x_atpmrna35438hypothetical protein-4e+0At5g06280unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.798.9GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
9.098.7GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.684.5GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.583.5GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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