Co-expression analysis

Gene ID PtpAffx.4889.5.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g62930: glutaredoxin family protein (HF=3e-5)
Module size 6 genes
NF 0.32
%ile 56.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7393.60.82PtpAffx.4889.5.A1_atCV267649--3e-5At3g62930glutaredoxin family proteinO.I.H.G.S.X.
0.3661.60.82Ptp.670.1.A1_atCK087317hypothetical protein-6e-1At5g14740CA2 (CARBONIC ANHYDRASE 2)O.I.H.G.S.X.
0.3153.70.85PtpAffx.206762.1.S1_atpmrna13424--3e-2At1g80330GA3OX4 (GIBBERELLIN 3-OXIDASE 4)O.I.H.G.S.X.
0.3153.70.87PtpAffx.147163.1.A1_atCV267314hypothetical protein-4e-1At4g23260ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseO.I.H.G.S.X.
0.2543.60.84PtpAffx.249.353.A1_atCV273034--5e-1At2g04070antiporter/ drug transporter/ transporterO.I.H.G.S.X.
0.2034.60.77PtpAffx.21178.1.S1_atBU887045hypothetical protein-1e+0At5g61210SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.798.9GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
9.098.7GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.684.5GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.583.5GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1609901_at, orthologous to the query gene, PtpAffx.4889.5.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7189.51609901_atAt3g62930hypothetical protein LOC100263137-2e+0At5g19800hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.4464.11612371_s_atAt3g62930hypothetical protein LOC100249184-5e-27At4g24280cpHsc70-1 (chloroplast heat shock protein 70-1)O.I.H.G.S.X.
0.4361.51610684_atAt3g62930hypothetical protein LOC100249184-2e-128At4g24280cpHsc70-1 (chloroplast heat shock protein 70-1)O.I.H.G.S.X.
0.2022.41618693_atAt3g62930hypothetical protein LOC100263832-9e-32At5g56500ATP binding / protein bindingO.I.H.G.S.X.
0.1313.31607943_atAt3g62930hypothetical protein LOC100263698-1e-8At3g26520TIP2 (TONOPLAST INTRINSIC PROTEIN 2)O.I.H.G.S.X.
0.066.81619091_atAt3g62930hypothetical protein LOC100262799-7e-19At5g23040CDF1 (CELL GROWTH DEFECT FACTOR 1)O.I.H.G.S.X.
0.045.21606772_atAt3g62930hypothetical protein LOC100259703 /// hypothetical LOC100258253-1e-35At4g16390-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays



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