Co-expression analysis

Gene ID	PtpAffx.4889.5.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g62930: glutaredoxin family protein (HF=3e-5)
Module size	6 genes
NF	0.32
%ile	56.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	0.82	PtpAffx.4889.5.A1_at	CV267649	-	-	3e-5	At3g62930	glutaredoxin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.82	Ptp.670.1.A1_at	CK087317	hypothetical protein	-	6e-1	At5g14740	CA2 (CARBONIC ANHYDRASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.85	PtpAffx.206762.1.S1_at	pmrna13424	-	-	3e-2	At1g80330	GA3OX4 (GIBBERELLIN 3-OXIDASE 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.87	PtpAffx.147163.1.A1_at	CV267314	hypothetical protein	-	4e-1	At4g23260	ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.84	PtpAffx.249.353.A1_at	CV273034	-	-	5e-1	At2g04070	antiporter/ drug transporter/ transporter	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.77	PtpAffx.21178.1.S1_at	BU887045	hypothetical protein	-	1e+0	At5g61210	SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.7	98.9	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
9.0	98.7	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.5	83.5	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

A co-expression module including the grape gene, 1609901_at, orthologous to the query gene, PtpAffx.4889.5.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.5	1609901_at	At3g62930	hypothetical protein LOC100263137	-	2e+0	At5g19800	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1612371_s_at	At3g62930	hypothetical protein LOC100249184	-	5e-27	At4g24280	cpHsc70-1 (chloroplast heat shock protein 70-1)	O.I.	H.G.	S.X.	Please select
0.43	61.5	1610684_at	At3g62930	hypothetical protein LOC100249184	-	2e-128	At4g24280	cpHsc70-1 (chloroplast heat shock protein 70-1)	O.I.	H.G.	S.X.	Please select
0.20	22.4	1618693_at	At3g62930	hypothetical protein LOC100263832	-	9e-32	At5g56500	ATP binding / protein binding	O.I.	H.G.	S.X.	Please select
0.13	13.3	1607943_at	At3g62930	hypothetical protein LOC100263698	-	1e-8	At3g26520	TIP2 (TONOPLAST INTRINSIC PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.06	6.8	1619091_at	At3g62930	hypothetical protein LOC100262799	-	7e-19	At5g23040	CDF1 (CELL GROWTH DEFECT FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.04	5.2	1606772_at	At3g62930	hypothetical protein LOC100259703 /// hypothetical LOC100258253	-	1e-35	At4g16390	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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