Co-expression analysis

Gene ID	PtpAffx.4889.5.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g62930: glutaredoxin family protein (HF=3e-5)
Module size	6 genes
NF	0.32
%ile	56.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	0.82	PtpAffx.4889.5.A1_at	CV267649	-	-	3e-5	At3g62930	glutaredoxin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.82	Ptp.670.1.A1_at	CK087317	hypothetical protein	-	6e-1	At5g14740	CA2 (CARBONIC ANHYDRASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.85	PtpAffx.206762.1.S1_at	pmrna13424	-	-	3e-2	At1g80330	GA3OX4 (GIBBERELLIN 3-OXIDASE 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.87	PtpAffx.147163.1.A1_at	CV267314	hypothetical protein	-	4e-1	At4g23260	ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.84	PtpAffx.249.353.A1_at	CV273034	-	-	5e-1	At2g04070	antiporter/ drug transporter/ transporter	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.77	PtpAffx.21178.1.S1_at	BU887045	hypothetical protein	-	1e+0	At5g61210	SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.7	98.9	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
9.0	98.7	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.5	83.5	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.65445.1.S1_at, orthologous to the query gene, PtpAffx.4889.5.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.1	TaAffx.65445.1.S1_at	At3g62930	-	-	3e-1	At5g19090	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	Ta.26301.1.A1_at	At3g62930	-	-	2e+0	At1g75460	ATP-dependent protease La (LON) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.54	75.5	TaAffx.118401.1.A1_at	At3g62930	-	-	1e+0	At2g47480	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.7	Ta.6762.3.S1_at	At3g62930	-	-	1e+0	At5g61490	-	O.I.	H.G.	S.X.	Please select
0.50	72.4	TaAffx.66028.1.S1_at	At3g62930	-	-	8e+0	At3g54826	-	O.I.	H.G.	S.X.	Please select
0.50	72.4	TaAffx.6157.1.S1_at	At3g62930	-	-	4e+0	At2g42930	glycosyl hydrolase family protein 17	O.I.	H.G.	S.X.	Please select
0.45	65.2	TaAffx.79437.1.S1_at	At3g62930	-	-	3e+0	At1g02680	TAF13 (TBP-ASSOCIATED FACTOR 13)	O.I.	H.G.	S.X.	Please select
0.44	64.5	TaAffx.120245.1.S1_at	At3g62930	-	-	1e-1	At4g17800	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.21581.1.S1_at	At3g62930	-	-	4e+0	At2g36460	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please select
0.41	59.6	TaAffx.4857.1.S1_at	At3g62930	-	-	4e+0	At1g77682	-	O.I.	H.G.	S.X.	Please select
0.41	59.6	TaAffx.58994.1.S1_at	At3g62930	-	-	4e+0	At3g52510	-	O.I.	H.G.	S.X.	Please select
0.41	59.6	TaAffx.132656.2.S1_at	At3g62930	-	-	1e+0	At1g76500	SOB3 (SUPPRESSOR OF PHYB-4#3)	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.16201.1.S1_at	At3g62930	-	-	3e+0	At5g57535	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	TaAffx.55653.1.S1_at	At3g62930	-	-	1e+1	At4g20030	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	TaAffx.85941.1.S1_at	At3g62930	-	-	2e+1	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	TaAffx.119601.1.S1_at	At3g62930	-	-	9e+0	At5g59950	RNA and export factor-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.35	49.8	TaAffx.85343.1.S1_at	At3g62930	-	-	4e+0	At5g34828	-	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.3911.2.S1_s_at	At3g62930	-	-	4e+0	At2g44290	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)	O.I.	H.G.	S.X.	Please select
0.29	39.2	TaAffx.80426.1.S1_at	At3g62930	-	-	4e-1	At2g12935	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	TaAffx.118620.1.S1_at	At3g62930	-	-	1e+0	At2g31560	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	TaAffx.107179.1.S1_at	At3g62930	-	-	8e-1	At3g60760	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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