CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.4889.5.A1_at

Gene name
Homology with Arabidopsis Similar to At3g62930: glutaredoxin family protein (HF=3e-5)

Module size 6 genes

NF 0.32

%ile 56.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 93.6 0.82 PtpAffx.4889.5.A1_at CV267649 - - 3e-5 At3g62930 glutaredoxin family protein O.I. H.G. S.X.
0.36 61.6 0.82 Ptp.670.1.A1_at CK087317 hypothetical protein - 6e-1 At5g14740 CA2 (CARBONIC ANHYDRASE 2) O.I. H.G. S.X.
0.31 53.7 0.85 PtpAffx.206762.1.S1_at pmrna13424 - - 3e-2 At1g80330 GA3OX4 (GIBBERELLIN 3-OXIDASE 4) O.I. H.G. S.X.
0.31 53.7 0.87 PtpAffx.147163.1.A1_at CV267314 hypothetical protein - 4e-1 At4g23260 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase O.I. H.G. S.X.
0.25 43.6 0.84 PtpAffx.249.353.A1_at CV273034 - - 5e-1 At2g04070 antiporter/ drug transporter/ transporter O.I. H.G. S.X.
0.20 34.6 0.77 PtpAffx.21178.1.S1_at BU887045 hypothetical protein - 1e+0 At5g61210 SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.7 98.9 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
9.0 98.7 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6 84.5 GSM372043 Clone1979_LPI5_N-_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.5 83.5 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

A co-expression module including the rice gene, Os03g0591800, orthologous to the query gene, PtpAffx.4889.5.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 Os03g0591800 At3g62930 - - 1e+0 At4g30900 - O.I. H.G. S.X.
0.71 89.6 Os11g0155800 At3g62930 - - 6e-2 At5g28630 glycine-rich protein O.I. H.G. S.X.
0.52 69.6 Os02g0598600 At3g62930 - Cyclin-like F-box domain containing protein 6e-1 At4g01600 GRAM domain-containing protein / ABA-responsive protein-related O.I. H.G. S.X.
0.50 68.0 Os10g0549900 At3g62930 - Protein of unknown function DUF659 domaincontaining protein 1e-1 At5g61500 ATG3 O.I. H.G. S.X.
0.48 63.7 Os02g0449700 At3g62930 - - 8e+0 At5g14750 ATMYB66 (MYB DOMAIN PROTEIN 66) O.I. H.G. S.X.
0.48 63.7 Os07g0196800 At3g62930 - - 3e-1 At2g47560 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.46 60.9 Os11g0175000 At3g62930 - Hypothetical protein 3e+0 At5g19050 unknown protein O.I. H.G. S.X.
0.43 55.4 Os02g0590700 At3g62930 - Conserved hypothetical protein 4e-2 At3g20860 ATNEK5 (NIMA-RELATED KINASE5) O.I. H.G. S.X.
0.40 51.1 Os06g0311150 At3g62930 - - 4e-1 At1g50930 unknown protein O.I. H.G. S.X.
0.39 48.3 Os03g0653100 At3g62930 - - 5e-1 At5g47970 nitrogen regulation family protein O.I. H.G. S.X.
0.33 38.8 Os02g0723900 At3g62930 - - 4e-1 At3g45210 unknown protein O.I. H.G. S.X.
0.26 25.6 Os05g0204700 At3g62930 - - 6e-1 At3g49120 PRXCB (PEROXIDASE CB) O.I. H.G. S.X.
0.24 22.4 Os11g0412102 At3g62930 - - 1e+0 At1g03490 ANAC006 (Arabidopsis NAC domain containing protein 6) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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