Co-expression analysis

Gene ID	PtpAffx.4889.5.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g62930: glutaredoxin family protein (HF=3e-5)
Module size	6 genes
NF	0.32
%ile	56.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	0.82	PtpAffx.4889.5.A1_at	CV267649	-	-	3e-5	At3g62930	glutaredoxin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.82	Ptp.670.1.A1_at	CK087317	hypothetical protein	-	6e-1	At5g14740	CA2 (CARBONIC ANHYDRASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.85	PtpAffx.206762.1.S1_at	pmrna13424	-	-	3e-2	At1g80330	GA3OX4 (GIBBERELLIN 3-OXIDASE 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.87	PtpAffx.147163.1.A1_at	CV267314	hypothetical protein	-	4e-1	At4g23260	ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.84	PtpAffx.249.353.A1_at	CV273034	-	-	5e-1	At2g04070	antiporter/ drug transporter/ transporter	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.77	PtpAffx.21178.1.S1_at	BU887045	hypothetical protein	-	1e+0	At5g61210	SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.7	98.9	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
9.0	98.7	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.5	83.5	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

A co-expression module including the barley gene, HM02K20r_at, orthologous to the query gene, PtpAffx.4889.5.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	HM02K20r_at	At3g62930	-	-	3e+0	At4g20290	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig21980_at	At3g62930	-	-	1e-1	At3g24450	copper-binding family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	Contig7450_at	At3g62930	-	-	7e+0	At3g21055	PSBTN (photosystem II subunit T)	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig16930_at	At3g62930	-	-	1e+0	At3g20430	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig7448_s_at	At3g62930	-	-	1e-1	At1g78340	ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)	O.I.	H.G.	S.X.	Please select
0.42	55.2	HW03J01T_at	At3g62930	-	-	3e-1	At1g78130	UNE2 (unfertilized embryo sac 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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