Co-expression analysis

Gene ID	PtpAffx.48233.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g62600: flavin-containing monooxygenase family protein / FMO family protein (HF=2e-9)
Module size	6 genes
NF	0.48
%ile	78.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	67.0	0.96	PtpAffx.48233.1.A1_at	CV265875	hypothetical protein	-	2e-9	At1g62600	flavin-containing monooxygenase family protein / FMO family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.96	Ptp.7283.1.S1_s_at	BU894467	hypothetical protein	-	2e-31	At3g19340	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.97	PtpAffx.12239.1.A1_at	CV258360	-	-	2e+0	At4g22740	glycine-rich protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.97	Ptp.4598.1.S1_s_at	CV282946	hypothetical protein	-	3e-36	At5g59140	SKP1 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.97	Ptp.2627.1.A1_s_at	CX177881	-	-	4e-1	At5g07230	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.97	PtpAffx.22299.1.S1_at	CN549751	f-box family protein	-	6e-53	At3g54480	SKIP5 (SKP1/ASK-INTERACTING PROTEIN 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.7	96.3	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2	93.5	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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