Co-expression analysis

Gene ID PtpAffx.4819.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g22820: allergen-related (HF=2e-2)
Module size 32 genes
NF 0.05
%ile 11.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9799.90.78PtpAffx.4819.1.A1_atCV273843--2e-2At3g22820allergen-relatedO.I.H.G.S.X.
0.2136.50.88PtpAffx.206511.1.S1_x_atpmrna12915hypothetical protein-7e-1At5g40451unknown proteinO.I.H.G.S.X.
0.1932.70.87PtpAffx.9782.1.A1_atDN490342--2e-1At3g50020serine protease inhibitor, potato inhibitor I-type family proteinO.I.H.G.S.X.
0.1321.60.86PtpAffx.115220.1.S1_atCX175982hypothetical protein-2e-2At1g78520-O.I.H.G.S.X.
0.1321.60.91PtpAffx.88467.1.A1_atCV265526--6e+0At5g48820ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE)O.I.H.G.S.X.
0.1118.10.85PtpAffx.26464.1.A1_atCK096475hypothetical protein-9e-2At4g15140unknown proteinO.I.H.G.S.X.
0.1118.10.87PtpAffx.223816.1.S1_a_atpmrna42018hypothetical protein-1e+0At4g2574040S ribosomal protein S10 (RPS10A)O.I.H.G.S.X.
0.1118.10.89PtpAffx.26549.1.A1_atCK092412--1e+0At1g20990DC1 domain-containing proteinO.I.H.G.S.X.
0.1016.30.89PtpAffx.50417.1.A1_atCV245399--2e-1At1g53560unknown proteinO.I.H.G.S.X.
0.1016.30.85PtpAffx.204439.1.S1_x_atpmrna8716condensin complex components subunit-7e-6At2g27170TTN7 (TITAN7)O.I.H.G.S.X.
0.1016.30.87PtpAffx.114758.1.A1_atCV245029hypothetical protein-2e-3At5g09390CD2-binding protein-relatedO.I.H.G.S.X.
0.1016.30.82PtpAffx.37646.2.A1_atCV243599hypothetical protein-2e+0At3g05860MADS-box protein (AGL45)O.I.H.G.S.X.
0.1016.30.88PtpAffx.22880.1.A1_atBP936826--4e+0At5g52810ornithine cyclodeaminase/mu-crystallin family proteinO.I.H.G.S.X.
0.0914.60.94Ptp.7779.1.S1_atDN499124--4e-1At4g37090unknown proteinO.I.H.G.S.X.
0.0711.60.89PtpAffx.69475.1.S1_atCK318526--1e+0At4g20290unknown proteinO.I.H.G.S.X.
0.0711.60.88PtpAffx.9601.1.S1_atDN487196--2e+0At3g08740elongation factor P (EF-P) family proteinO.I.H.G.S.X.
0.0711.60.93PtpAffx.17308.1.S1_atCV254269hypothetical protein-1e-36At3g12170DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.069.80.89PtpAffx.42196.1.A1_atBP935361glycoside hydrolase-5e+0At4g02590UNE12 (unfertilized embryo sac 12)O.I.H.G.S.X.
0.069.80.91PtpAffx.40910.1.S1_atBU830361hypothetical protein-1e+0At2g43560immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinO.I.H.G.S.X.
0.058.30.89PtpAffx.22598.1.S1_atCV273129hypothetical protein-5e-4At1g71865unknown proteinO.I.H.G.S.X.
0.046.90.93PtpAffx.835.1.S1_atCV130820hypothetical protein-4e-140At1g10580transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.046.90.91Ptp.320.1.S1_atBU834618hypothetical protein-2e-32At5g49510PDF3 (PREFOLDIN 3)O.I.H.G.S.X.
0.046.90.91PtpAffx.215989.1.S1_atpmrna30485hypothetical protein-1e-7At3g05380DNA binding / transcription factorO.I.H.G.S.X.
0.046.90.92PtpAffx.12091.1.S1_atCV230646--5e-7At4g17960unknown proteinO.I.H.G.S.X.
0.046.90.91PtpAffx.206511.1.S1_atpmrna12915hypothetical protein-7e-1At5g40451unknown proteinO.I.H.G.S.X.
0.035.20.92PtpAffx.213950.1.S1_atpmrna27193hypothetical protein-5e-4At5g15280pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.035.20.89Ptp.2710.1.S1_s_atBU865876hypothetical protein-2e-14At3g0670060S ribosomal protein L29 (RPL29A)O.I.H.G.S.X.
0.035.20.92PtpAffx.127010.1.A1_a_atCV252354--4e-3At1g79940ATERDJ2AO.I.H.G.S.X.
0.035.20.83PtpAffx.219656.1.S1_atpmrna35620hypothetical protein-4e+0At3g14670unknown proteinO.I.H.G.S.X.
0.023.60.92PtpAffx.156381.1.S1_atCN524049hypothetical protein-2e-4At3g52260pseudouridine synthase family proteinO.I.H.G.S.X.
0.023.60.88PtpAffx.221674.1.S1_s_atpmrna38677hypothetical protein-2e-2At1g30570protein kinase family proteinO.I.H.G.S.X.
0.012.20.91PtpAffx.115220.1.S1_s_atCX175982hypothetical protein-2e-2At1g78520-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.995.1GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.289.3GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.289.3GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.785.5GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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