Co-expression analysis

Gene ID PtpAffx.4771.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At5g09500: 40S ribosomal protein S15 (RPS15C) (HF=5e+0)
Module size 12 genes
NF 0.11
%ile 22.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9699.80.80PtpAffx.4771.1.A1_atCV275330--5e+0At5g0950040S ribosomal protein S15 (RPS15C)O.I.H.G.S.X.
0.2747.10.88PtpAffx.3384.3.S1_a_atDN502998hypothetical protein-1e+0At1g36640unknown proteinO.I.H.G.S.X.
0.2136.50.90PtpAffx.206853.1.S1_atpmrna13617hypothetical protein-2e-4At5g10730binding / catalytic/ coenzyme bindingO.I.H.G.S.X.
0.1830.80.87PtpAffx.20634.4.S1_a_atCV273790hypothetical protein-5e-3At2g41420proline-rich family proteinO.I.H.G.S.X.
0.1525.30.89PtpAffx.46613.2.A1_atCK087596--1e+0At2g23430ICK1O.I.H.G.S.X.
0.1016.30.89PtpAffx.212550.1.S1_atpmrna24587NAC domain protein, IPR003441-2e+0At5g62850AtVEX1 (VEGETATIVE CELL EXPRESSED1)O.I.H.G.S.X.
0.0812.90.90PtpAffx.24090.1.A1_atCV274984--1e+0At2g25270unknown proteinO.I.H.G.S.X.
0.0711.60.90PtpAffx.249.670.A1_atBP930255--7e-45At4g05050UBQ11 (UBIQUITIN 11)O.I.H.G.S.X.
0.0711.60.85PtpAffx.210479.1.S1_s_atpmrna20565hypothetical protein-1e+0At1g27300unknown proteinO.I.H.G.S.X.
0.0711.60.87PtpAffx.43228.1.A1_atCV283569--1e+0At3g28620zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.069.80.87Ptp.1340.1.A1_atCK093347hypothetical protein-1e+0At3g4502050S ribosomal protein-relatedO.I.H.G.S.X.
0.046.90.88PtpAffx.216120.1.S1_s_atpmrna30706hypothetical protein-3e-3At1g02640BXL2 (BETA-XYLOSIDASE 2)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.794.7GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
3.193.2GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.289.3GSM372099Clone3200_LPI5_N+_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.785.5GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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