Co-expression analysis

Gene ID PtpAffx.47668.1.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g16150: L-asparaginase, putative / L-asparagine amidohydrolase, putative (HF=2e-9)
Module size 6 genes
NF 0.30
%ile 53.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.80PtpAffx.47668.1.A1_atCV254098hypothetical protein-2e-9At3g16150L-asparaginase, putative / L-asparagine amidohydrolase, putativeO.I.H.G.S.X.
0.4067.00.79PtpAffx.203696.1.S1_atpmrna7321--2e-19At4g21760BGLU47 (Beta-glucosidase 47)O.I.H.G.S.X.
0.3661.60.91PtpAffx.219994.1.S1_atpmrna36219hypothetical protein-6e-2At1g09932phosphoglycerate/bisphosphoglycerate mutase-relatedO.I.H.G.S.X.
0.2543.60.89PtpAffx.210127.1.S1_atpmrna19956hypothetical protein-7e-21At3g15850FAD5 (FATTY ACID DESATURASE 5)O.I.H.G.S.X.
0.2340.50.89PtpAffx.100056.1.A1_atBP932830--1e+0At5g63085-O.I.H.G.S.X.
0.1219.60.81PtpAffx.214717.1.S1_s_atpmrna28543hypothetical protein-4e-5At1g18390ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.897.4GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
4.395.8GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.794.7GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.494.0GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.490.4GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.088.0GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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