Co-expression analysis

Gene ID	PtpAffx.47344.1.S1_at
Gene name	white-brown-complex ABC transporter family /// white-brown-complex ABC transporter family
Homology with Arabidopsis	Similar to At1g31770: ABC transporter family protein (HF=1e-48)
Module size	6 genes
NF	0.55
%ile	86.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.94	PtpAffx.47344.1.S1_at	CK097216	white-brown-complex ABC transporter family /// white-brown-complex ABC transporter family	-	1e-48	At1g31770	ABC transporter family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	PtpAffx.208025.1.S1_at	pmrna15931	hypothetical protein	-	4e-10	At1g67030	ZFP6 (ZINC FINGER PROTEIN 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.96	PtpAffx.212396.1.S1_at	pmrna24286	hypothetical protein	-	7e-10	At1g71870	MATE efflux family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.93	Ptp.7995.1.S1_at	DN503291	hypothetical protein	-	5e-1	At3g19320	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.94	PtpAffx.162571.1.A1_at	CV253632	-	-	3e-12	At4g14465	DNA-binding protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.94	PtpAffx.211007.1.S1_at	pmrna21629	hypothetical protein	-	1e-5	At3g04570	DNA-binding protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	97.1	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0	92.9	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9	92.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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