Co-expression analysis

Gene ID	PtpAffx.47069.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g04720: PR4 (PATHOGENESIS-RELATED 4) (HF=2e-6)
Module size	6 genes
NF	0.41
%ile	69.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	97.0	0.84	PtpAffx.47069.1.A1_at	CV238066	hypothetical protein	-	2e-6	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.87	PtpAffx.37705.1.S1_at	CV241732	-	-	4e-1	At1g36745	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.87	PtpAffx.109483.1.A1_s_at	CV269063	hypothetical protein	-	4e+0	At5g28610	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.85	PtpAffx.213724.1.S1_at	pmrna26781	hypothetical protein	-	2e+0	At4g33355	lipid binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.89	PtpAffx.225012.1.S1_at	pmrna44004	hypothetical protein	-	2e-5	At2g29710	UDP-glucoronosyl/UDP-glucosyl transferase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.84	PtpAffx.2286.3.S1_a_at	CV241494	hypothetical protein	-	2e+0	At2g26550	HO2 (HEME OXYGENASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	95.5	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8	92.1	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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