CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.4633.2.S1_at

Gene name
Homology with Arabidopsis Similar to At1g07820: histone H4 (HF=9e-47)

Module size 21 genes

NF 0.19

%ile 36.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.76 94.3 0.87 PtpAffx.4633.2.S1_at CA823688 - - 9e-47 At1g07820 histone H4 O.I. H.G. S.X.
0.38 63.7 0.93 PtpAffx.209442.1.S1_at pmrna18704 hypothetical protein - 2e-23 At3g52170 DNA binding O.I. H.G. S.X.
0.30 52.0 0.94 Ptp.2920.1.S1_at CF936621 histone 2 - 4e-17 At1g51060 HTA10 O.I. H.G. S.X.
0.28 50.5 0.94 PtpAffx.2725.1.A1_at CV239343 hypothetical protein - 4e-175 At5g52920 PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1) O.I. H.G. S.X.
0.26 45.2 0.94 PtpAffx.249.331.S1_a_at CN549900 hypothetical protein - 3e-33 At3g54470 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) O.I. H.G. S.X.
0.25 43.6 0.91 Ptp.5934.1.S1_s_at CV245437 hypothetical protein - 6e-4 At4g08980 F-box family protein (FBW2) O.I. H.G. S.X.
0.21 36.5 0.92 Ptp.7553.1.S1_s_at CV265691 - - 5e-85 At1g75330 OTC (ORNITHINE CARBAMOYLTRANSFERASE) O.I. H.G. S.X.
0.21 36.5 0.91 PtpAffx.2472.1.S1_at CV257171 hypothetical protein - 2e-75 At3g63410 APG1 (ALBINO OR PALE GREEN MUTANT 1) O.I. H.G. S.X.
0.19 32.7 0.93 Ptp.2403.1.S1_at CV259541 - - 1e-14 At4g16830 nuclear RNA-binding protein (RGGA) O.I. H.G. S.X.
0.18 30.8 0.93 PtpAffx.76101.1.A1_at CX182245 hypothetical protein - 3e-1 At5g60440 AGL62 (Agamous-like 62) O.I. H.G. S.X.
0.17 29.1 0.91 PtpAffx.210451.1.S1_at pmrna20521 hypothetical protein - 1e-62 At3g18524 MSH2 (MUTS HOMOLOG 2) O.I. H.G. S.X.
0.17 29.1 0.92 PtpAffx.80851.1.S1_at BP932470 hypothetical protein - 7e-10 At5g08540 unknown protein O.I. H.G. S.X.
0.16 26.9 0.94 PtpAffx.129727.1.S1_s_at AJ769973 hypothetical protein - 2e-22 At4g16340 SPK1 (SPIKE1) O.I. H.G. S.X.
0.16 26.9 0.94 Ptp.7553.1.S1_a_at CV265691 hypothetical protein - 5e-85 At1g75330 OTC (ORNITHINE CARBAMOYLTRANSFERASE) O.I. H.G. S.X.
0.15 25.3 0.93 Ptp.259.1.S1_s_at CK087770 hypothetical protein - 7e-28 At3g27740 CARA (CARBAMOYL PHOSPHATE SYNTHETASE A) O.I. H.G. S.X.
0.13 21.6 0.91 PtpAffx.206088.1.S1_at pmrna12058 hypothetical protein - 8e-8 At5g04050 - O.I. H.G. S.X.
0.13 21.6 0.95 PtpAffx.221791.1.S1_s_at pmrna38844 hypothetical protein - 5e-54 At1g72040 deoxynucleoside kinase family O.I. H.G. S.X.
0.12 19.6 0.93 Ptp.2547.1.S1_s_at CA823612 hypothetical protein - 2e-49 At2g21580 40S ribosomal protein S25 (RPS25B) O.I. H.G. S.X.
0.11 18.1 0.92 PtpAffx.205810.1.S1_at pmrna11485 hypothetical protein - 9e-20 At5g42480 ARC6 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6) O.I. H.G. S.X.
0.10 16.3 0.94 PtpAffx.13117.1.A1_at CV264243 hypothetical protein - 3e-2 At1g20220 nucleic acid binding O.I. H.G. S.X.
0.08 12.9 0.93 PtpAffx.249.331.S1_at CN549900 hypothetical protein - 3e-33 At3g54470 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.76	94.3	0.87	PtpAffx.4633.2.S1_at	CA823688	-	-	9e-47	At1g07820	histone H4	O.I.	H.G.	S.X.
0.38	63.7	0.93	PtpAffx.209442.1.S1_at	pmrna18704	hypothetical protein	-	2e-23	At3g52170	DNA binding	O.I.	H.G.	S.X.
0.30	52.0	0.94	Ptp.2920.1.S1_at	CF936621	histone 2	-	4e-17	At1g51060	HTA10	O.I.	H.G.	S.X.
0.28	50.5	0.94	PtpAffx.2725.1.A1_at	CV239343	hypothetical protein	-	4e-175	At5g52920	PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1)	O.I.	H.G.	S.X.
0.26	45.2	0.94	PtpAffx.249.331.S1_a_at	CN549900	hypothetical protein	-	3e-33	At3g54470	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)	O.I.	H.G.	S.X.
0.25	43.6	0.91	Ptp.5934.1.S1_s_at	CV245437	hypothetical protein	-	6e-4	At4g08980	F-box family protein (FBW2)	O.I.	H.G.	S.X.
0.21	36.5	0.92	Ptp.7553.1.S1_s_at	CV265691	-	-	5e-85	At1g75330	OTC (ORNITHINE CARBAMOYLTRANSFERASE)	O.I.	H.G.	S.X.
0.21	36.5	0.91	PtpAffx.2472.1.S1_at	CV257171	hypothetical protein	-	2e-75	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	O.I.	H.G.	S.X.
0.19	32.7	0.93	Ptp.2403.1.S1_at	CV259541	-	-	1e-14	At4g16830	nuclear RNA-binding protein (RGGA)	O.I.	H.G.	S.X.
0.18	30.8	0.93	PtpAffx.76101.1.A1_at	CX182245	hypothetical protein	-	3e-1	At5g60440	AGL62 (Agamous-like 62)	O.I.	H.G.	S.X.
0.17	29.1	0.91	PtpAffx.210451.1.S1_at	pmrna20521	hypothetical protein	-	1e-62	At3g18524	MSH2 (MUTS HOMOLOG 2)	O.I.	H.G.	S.X.
0.17	29.1	0.92	PtpAffx.80851.1.S1_at	BP932470	hypothetical protein	-	7e-10	At5g08540	unknown protein	O.I.	H.G.	S.X.
0.16	26.9	0.94	PtpAffx.129727.1.S1_s_at	AJ769973	hypothetical protein	-	2e-22	At4g16340	SPK1 (SPIKE1)	O.I.	H.G.	S.X.
0.16	26.9	0.94	Ptp.7553.1.S1_a_at	CV265691	hypothetical protein	-	5e-85	At1g75330	OTC (ORNITHINE CARBAMOYLTRANSFERASE)	O.I.	H.G.	S.X.
0.15	25.3	0.93	Ptp.259.1.S1_s_at	CK087770	hypothetical protein	-	7e-28	At3g27740	CARA (CARBAMOYL PHOSPHATE SYNTHETASE A)	O.I.	H.G.	S.X.
0.13	21.6	0.91	PtpAffx.206088.1.S1_at	pmrna12058	hypothetical protein	-	8e-8	At5g04050	-	O.I.	H.G.	S.X.
0.13	21.6	0.95	PtpAffx.221791.1.S1_s_at	pmrna38844	hypothetical protein	-	5e-54	At1g72040	deoxynucleoside kinase family	O.I.	H.G.	S.X.
0.12	19.6	0.93	Ptp.2547.1.S1_s_at	CA823612	hypothetical protein	-	2e-49	At2g21580	40S ribosomal protein S25 (RPS25B)	O.I.	H.G.	S.X.
0.11	18.1	0.92	PtpAffx.205810.1.S1_at	pmrna11485	hypothetical protein	-	9e-20	At5g42480	ARC6 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6)	O.I.	H.G.	S.X.
0.10	16.3	0.94	PtpAffx.13117.1.A1_at	CV264243	hypothetical protein	-	3e-2	At1g20220	nucleic acid binding	O.I.	H.G.	S.X.
0.08	12.9	0.93	PtpAffx.249.331.S1_at	CN549900	hypothetical protein	-	3e-33	At3g54470	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.0 92.9 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1 88.6 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9 87.2 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9 87.2 GSM372044 Clone1979_LPI5_N+_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
3.0	92.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	PtpAffx.4633.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g07820: histone H4 (HF=9e-47)
Module size	21 genes
NF	0.19
%ile	36.0

Co-expression analysis

Gene ID PtpAffx.4633.2.S1_at Gene name Homology with ArabidopsisSimilar to At1g07820: histone H4 (HF=9e-47) Module size 21 genes NF 0.19 %ile 36.0

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.4633.2.S1_at

Gene name
Homology with Arabidopsis Similar to At1g07820: histone H4 (HF=9e-47)

Module size 21 genes

NF 0.19

%ile 36.0

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays