Co-expression analysis

Gene ID	PtpAffx.45958.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g02410: cytochrome c oxidase assembly protein CtaG / Cox11 family (HF=7e-55)
Module size	9 genes
NF	0.27
%ile	48.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	84.9	0.94	PtpAffx.45958.1.A1_at	DN492279	hypothetical protein	-	7e-55	At1g02410	cytochrome c oxidase assembly protein CtaG / Cox11 family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.58	84.2	0.94	PtpAffx.5486.1.S1_at	CV256117	hypothetical protein	-	1e-32	At2g20930	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.96	PtpAffx.21786.1.S1_at	CV234229	hypothetical protein	-	3e-27	At5g66410	PLP3b (Phosducin-like protein 3 homolog)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.94	PtpAffx.34850.1.A1_at	CV235140	hypothetical protein	-	2e-5	At4g34270	TIP41-like family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.95	PtpAffx.12697.1.S1_at	CV278873	hypothetical protein	-	1e-1	At3g26340	20S proteasome beta subunit E, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.95	PtpAffx.50674.1.A1_a_at	CV264554	hypothetical protein	-	3e-51	At2g25950	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.95	Ptp.2608.1.S1_s_at	CV276221	hypothetical protein	-	7e-5	At1g64220	TOM7-2 (TRANSLOCASE OF OUTER MEMBRANE 7 KDA SUBUNIT 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.94	Ptp.2388.1.A1_s_at	CV241230	hypothetical protein	-	2e-6	At4g26410	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.94	PtpAffx.51977.1.S1_at	CV239878	-	-	3e-33	At1g77180	chromatin protein family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	96.4	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.6	96.2	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.9	95.1	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1	93.2	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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