Co-expression analysis

Gene ID	PtpAffx.4579.1.S1_at
Gene name	precursor of carboxylase h-protein 4, glycine decarboxylase complex
Homology with Arabidopsis	Similar to At2g35370: GDCH (HF=4e-29)
Module size	7 genes
NF	0.54
%ile	85.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.52	79.4	0.97	PtpAffx.4579.1.S1_at	BU869151	precursor of carboxylase h-protein 4, glycine decarboxylase complex	-	4e-29	At2g35370	GDCH	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.97	Ptp.5340.1.S1_at	CV252953	-	-	8e-6	At3g54210	ribosomal protein L17 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.97	PtpAffx.17571.1.A1_at	CV277470	hypothetical protein	-	1e-14	At3g55330	PPL1 (PsbP-like protein 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.97	Ptp.3375.1.S1_at	CV281370	hypothetical protein	-	7e-6	At3g56910	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.97	PtpAffx.26613.1.S1_at	CX175693	hypothetical protein	-	9e-52	At4g18480	CHLI1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.97	Ptp.5722.1.S1_at	CV226697	hypothetical protein	-	2e-15	At1g64510	ribosomal protein S6 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.97	PtpAffx.40844.1.S1_at	CV233738	-	-	1e-4	At3g61870	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	94.9	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.5	83.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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