Co-expression analysis

Gene ID	PtpAffx.45481.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g67040: unknown protein (HF=2e-2)
Module size	7 genes
NF	0.05
%ile	11.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	97.4	0.91	PtpAffx.45481.1.S1_s_at	CK107626	hypothetical protein	-	2e-2	At5g67040	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.92	PtpAffx.211416.1.S1_at	pmrna22372	AP2 domain-containing transcription factor	-	5e-71	At4g37750	ANT (AINTEGUMENTA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.93	PtpAffx.110115.1.A1_at	CK091091	hypothetical protein	-	2e+0	At2g26240	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.93	PtpAffx.20634.4.S1_at	CV273790	-	-	5e-3	At2g41420	proline-rich family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.92	PtpAffx.212832.1.S1_s_at	pmrna25117	hypothetical protein	-	3e-13	At3g48430	REF6 (RELATIVE OF EARLY FLOWERING 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.92	PtpAffx.30207.1.S1_s_at	CV257448	hypothetical protein	-	2e-61	At3g11730	ATFP8	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.92	PtpAffx.163957.1.S1_s_at	BU891545	hypothetical protein	-	1e-10	At1g06130	GLX2-4 (glyoxalase 2-4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	94.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8	92.1	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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