Co-expression analysis

Gene ID PtpAffx.4533.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g35181: unknown protein (HF=7e-2)
Module size 6 genes
NF 0.76
%ile 98.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.95PtpAffx.4533.1.S1_atCV242797hypothetical protein-7e-2At1g35181unknown proteinO.I.H.G.S.X.
0.8397.00.97Ptp.7112.1.S1_s_atCX181950hypothetical protein-2e+0At5g09980PROPEP4 (Elicitor peptide 4 precursor)O.I.H.G.S.X.
0.8096.00.97PtpAffx.65180.2.A1_atCK091548AP2/ERF domain-containing transcription factor-5e-26At5g50080DNA binding / transcription factorO.I.H.G.S.X.
0.7393.60.97Ptp.7393.1.S1_atCV282731AP2/ERF domain-containing transcription factor-8e-22At2g47520AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.6187.00.97Ptp.7112.1.S1_atCX181950hypothetical protein-2e+0At5g09980PROPEP4 (Elicitor peptide 4 precursor)O.I.H.G.S.X.
0.5582.20.97PtpAffx.4042.1.S1_atCV241460hypothetical protein-1e-1At3g62550universal stress protein (USP) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.098.4GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
7.598.3GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.494.0GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.494.0GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.987.2GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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