Co-expression analysis

Gene ID PtpAffx.45276.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g26730: zinc finger (C3HC4-type RING finger) family protein (HF=6e-5)
Module size 7 genes
NF 0.34
%ile 58.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8096.00.92PtpAffx.45276.1.S1_atCK090427hypothetical protein-6e-5At3g26730zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3661.60.95Ptp.7815.1.A1_atCX185861hypothetical protein-1e-1At2g19360unknown proteinO.I.H.G.S.X.
0.3153.70.96PtpAffx.150481.1.S1_atCK105112hypothetical protein-2e-12At5g43930transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.3052.00.97PtpAffx.1258.4.S1_s_atCF232778actin 1 /// actin 9-0At5g09810ACT7 (ACTIN 7)O.I.H.G.S.X.
0.2950.50.96PtpAffx.4277.1.S1_a_atCV265521--1e-131At3g02520GRF7 (GENERAL REGULATORY FACTOR 7)O.I.H.G.S.X.
0.2441.80.97Ptp.5444.1.S1_x_atBU869351hypothetical protein-6e-121At5g20010RAN-1O.I.H.G.S.X.
0.1525.30.96PtpAffx.1258.1.S1_s_atCV242350actin 1-5e-138At5g09810ACT7 (ACTIN 7)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6388.10.92PtpAffx.223382.1.S1_atpmrna41357hypothetical protein-4e-25At1g65380CLV2 (clavata 2)O.I.H.G.S.X.
0.5582.20.90PtpAffx.99708.1.A1_a_atDN492914Cl-channel clc-3-7e-12At1g55620CLC-F (CHLORIDE CHANNEL F)O.I.H.G.S.X.
0.5582.20.93PtpAffx.80314.1.A1_atDN492817--5e+0At5g43720unknown proteinO.I.H.G.S.X.
0.5380.50.94PtpAffx.76562.1.A1_atCV225402hypothetical protein-8e+0At3g52830-O.I.H.G.S.X.
0.4673.70.89Ptp.7264.1.S1_atDN493176hypothetical protein-4e-1At1g27450APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)O.I.H.G.S.X.
0.4471.90.91PtpAffx.111310.1.S1_atDN487555--3e+0At5g62880ARAC10O.I.H.G.S.X.
0.4471.90.93PtpAffx.207441.1.S1_atpmrna14779--8e-4At5g67610unknown proteinO.I.H.G.S.X.
0.4471.90.97PtpAffx.5471.1.A1_a_atCV252337hypothetical protein-3e-15At3g09640APX2 (ASCORBATE PEROXIDASE 2)O.I.H.G.S.X.
0.4471.90.97PtpAffx.29211.1.S1_s_atCK317782hypothetical protein-3e-8At4g34210ASK11 (ARABIDOPSIS SKP1-LIKE 11)O.I.H.G.S.X.
0.4471.90.98Ptp.6486.1.S1_s_atCV249938actin 1-0At1g49240ACT8 (ACTIN 8)O.I.H.G.S.X.
0.4067.00.89PtpAffx.50701.1.A1_atCV236056--8e-1At4g20670lipaseO.I.H.G.S.X.
0.4067.00.90Ptp.7432.1.S1_atDN499787--5e-2At3g18700-O.I.H.G.S.X.
0.4067.00.92PtpAffx.20990.2.A1_atBU836127hypothetical protein-2e-15At3g11910UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13)O.I.H.G.S.X.
0.4067.00.95PtpAffx.82658.1.A1_atCV238304--4e+0At3g61660unknown proteinO.I.H.G.S.X.
0.4067.00.96Ptp.1497.2.S1_x_atCV243508s-adenosylmethionine synthetase 5-3e-179At1g02500SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1)O.I.H.G.S.X.
0.4067.00.97PtpAffx.215548.1.S1_x_atpmrna29808hypothetical protein-9e-74Atcg00670-O.I.H.G.S.X.
0.3863.70.91PtpAffx.50168.1.A1_atCV256470--2e-1At3g02440unknown proteinO.I.H.G.S.X.
0.3863.70.95Ptp.3677.1.S1_s_atCV255022hypothetical protein-0Atcg00900-O.I.H.G.S.X.
0.3661.60.91Ptp.3221.2.S1_atDN490741--3e-1At2g31305INH3 (INHIBITOR-3)O.I.H.G.S.X.
0.3661.60.93Ptp.180.1.S1_s_atCV258639hypothetical protein-1e-14At3g56090ATFER3 (ferritin 3)O.I.H.G.S.X.
0.3559.70.93PtpAffx.50143.1.A1_atCV257368--6e+0At4g37280MRG family proteinO.I.H.G.S.X.
0.3559.70.88PtpAffx.33771.1.S1_atDN486775--2e+1At4g26770phosphatidate cytidylyltransferase/ transferase, transferring phosphorus-containing groupsO.I.H.G.S.X.
0.3559.70.96PtpAffx.12342.2.S1_s_atCV256206aquaporin, MIP family, PIP subfamily-4e-73At4g23400PIP1O.I.H.G.S.X.
0.3357.50.89PtpAffx.2800.1.S1_atBU822252--1e+0At1g58265cytochrome P450-relatedO.I.H.G.S.X.
0.3357.50.91PtpAffx.69012.1.S1_atCV274040hypothetical protein-1e+0At3g29152-O.I.H.G.S.X.
0.3357.50.98Ptp.5592.1.S1_atAF272572.1hypothetical protein-5e-82At5g38480GRF3 (GENERAL REGULATORY FACTOR 3)O.I.H.G.S.X.
0.3255.20.94Ptp.1450.1.S1_atBU866068hypothetical protein-6e-12At3g19910zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2950.50.90PtpAffx.42589.1.A1_atCV261628hypothetical protein-8e-21At5g25150TAF5 (TBP-ASSOCIATED FACTOR 5)O.I.H.G.S.X.
0.2950.50.92PtpAffx.222899.1.S1_atpmrna40615hypothetical protein-7e-1At4g05270ubiquitin family proteinO.I.H.G.S.X.
0.2950.50.94PtpAffx.215420.1.S1_atpmrna29587nbs-lrr resistance protein-5e+0At5g66658unknown proteinO.I.H.G.S.X.
0.2950.50.94PtpAffx.35467.3.A1_a_atDN490053hypothetical protein-2e-5At4g33945armadillo/beta-catenin repeat family proteinO.I.H.G.S.X.
0.2950.50.95Ptp.3416.1.S1_s_atCV243653--0Atmg01275-O.I.H.G.S.X.
0.2950.50.97Ptp.2488.1.S1_atCV234562hypothetical protein-2e-89At5g41700UBC8 (UBIQUITIN CONJUGATING ENZYME 8)O.I.H.G.S.X.
0.2747.10.96Ptp.5047.1.S1_atCX659134--2e-29At4g24290-O.I.H.G.S.X.
0.2747.10.97PtpAffx.21710.1.S1_s_atCV230014hypothetical protein-8e-120At1g10630ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)O.I.H.G.S.X.
0.2645.20.95PtpAffx.59907.1.A1_atCV226270hypothetical protein-4e-14At2g15860unknown proteinO.I.H.G.S.X.
0.2543.60.93PtpAffx.20458.1.S1_atCV256549hypothetical protein-2e-41At4g02570ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)O.I.H.G.S.X.
0.2543.60.95PtpAffx.9947.1.A1_atDN492203hypothetical protein-1e-35At1g69960PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)O.I.H.G.S.X.
0.2543.60.96Ptp.8000.1.S1_atDN484105hypothetical protein-0Atmg01190-O.I.H.G.S.X.
0.2543.60.97Ptp.2488.1.S1_x_atCV234562hypothetical protein-2e-89At5g41700UBC8 (UBIQUITIN CONJUGATING ENZYME 8)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.596.1GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.791.8GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.088.0GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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