Co-expression analysis

Gene ID PtpAffx.45276.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g26730: zinc finger (C3HC4-type RING finger) family protein (HF=6e-5)
Module size 7 genes
NF 0.34
%ile 58.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8096.00.92PtpAffx.45276.1.S1_atCK090427hypothetical protein-6e-5At3g26730zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3661.60.95Ptp.7815.1.A1_atCX185861hypothetical protein-1e-1At2g19360unknown proteinO.I.H.G.S.X.
0.3153.70.96PtpAffx.150481.1.S1_atCK105112hypothetical protein-2e-12At5g43930transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.3052.00.97PtpAffx.1258.4.S1_s_atCF232778actin 1 /// actin 9-0At5g09810ACT7 (ACTIN 7)O.I.H.G.S.X.
0.2950.50.96PtpAffx.4277.1.S1_a_atCV265521--1e-131At3g02520GRF7 (GENERAL REGULATORY FACTOR 7)O.I.H.G.S.X.
0.2441.80.97Ptp.5444.1.S1_x_atBU869351hypothetical protein-6e-121At5g20010RAN-1O.I.H.G.S.X.
0.1525.30.96PtpAffx.1258.1.S1_s_atCV242350actin 1-5e-138At5g09810ACT7 (ACTIN 7)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.596.1GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.791.8GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.088.0GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1618291_at, orthologous to the query gene, PtpAffx.45276.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7591.31618291_atAt3g26730hypothetical protein LOC100255871-4e+0At5g26673-O.I.H.G.S.X.
0.7289.71621763_s_atAt3g26730hypothetical protein LOC100246745-2e-37At3g49010ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1)O.I.H.G.S.X.
0.6787.91621800_atAt3g26730hypothetical protein LOC100247038-3e-2At5g47320RPS19 (RIBOSOMAL PROTEIN S19)O.I.H.G.S.X.
0.6484.71621806_atAt3g26730hypothetical protein LOC100265511-1e-13At2g4051040S ribosomal protein S26 (RPS26A)O.I.H.G.S.X.
0.5980.61610997_atAt3g26730hypothetical protein LOC100266516-1e-13At3g5389040S ribosomal protein S21 (RPS21B)O.I.H.G.S.X.
0.5475.71620525_atAt3g26730similar to RPL18AA (60S RIBOSOMAL PROTEIN L18A-1); structural constituent of ribosome-5e-47At3g1460060S ribosomal protein L18A (RPL18aC)O.I.H.G.S.X.
0.5375.21621771_atAt3g2673040S ribosomal protein SA-1e-110At1g72370P40O.I.H.G.S.X.
0.5072.71607415_atAt3g26730hypothetical protein LOC100252123-9e-1At2g01260unknown proteinO.I.H.G.S.X.
0.5072.71616421_s_atAt3g26730hypothetical protein LOC100245272-3e-63At1g22780PFL (POINTED FIRST LEAVES)O.I.H.G.S.X.
0.4260.11622212_atAt3g26730hypothetical protein LOC100250769-3e-54At2g46280TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1)O.I.H.G.S.X.
0.4158.71606468_atAt3g26730hypothetical protein LOC100256800-6e-25At5g2785060S ribosomal protein L18 (RPL18C)O.I.H.G.S.X.
0.3853.61620069_s_atAt3g26730hypothetical protein LOC100248991-9e-51At3g61110ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)O.I.H.G.S.X.
0.3345.71610560_atAt3g26730hypothetical protein LOC100258347-7e-52At3g4737040S ribosomal protein S20 (RPS20B)O.I.H.G.S.X.
0.3345.71613860_s_atAt3g26730cyc07-6e-38At3g0484040S ribosomal protein S3A (RPS3aA)O.I.H.G.S.X.
0.3039.41618738_atAt3g26730hypothetical protein LOC100252524-3e-45At1g30230elongation factor 1-beta / EF-1-betaO.I.H.G.S.X.
0.3039.41610095_s_atAt3g26730hypothetical protein LOC100257471-9e-49At5g2390060S ribosomal protein L13 (RPL13D)O.I.H.G.S.X.
0.2734.01610148_atAt3g26730hypothetical protein LOC100251826-9e-9At3g0963060S ribosomal protein L4/L1 (RPL4A)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays



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