Co-expression analysis

Gene ID PtpAffx.45276.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g26730: zinc finger (C3HC4-type RING finger) family protein (HF=6e-5)
Module size 7 genes
NF 0.34
%ile 58.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8096.00.92PtpAffx.45276.1.S1_atCK090427hypothetical protein-6e-5At3g26730zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3661.60.95Ptp.7815.1.A1_atCX185861hypothetical protein-1e-1At2g19360unknown proteinO.I.H.G.S.X.
0.3153.70.96PtpAffx.150481.1.S1_atCK105112hypothetical protein-2e-12At5g43930transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.3052.00.97PtpAffx.1258.4.S1_s_atCF232778actin 1 /// actin 9-0At5g09810ACT7 (ACTIN 7)O.I.H.G.S.X.
0.2950.50.96PtpAffx.4277.1.S1_a_atCV265521--1e-131At3g02520GRF7 (GENERAL REGULATORY FACTOR 7)O.I.H.G.S.X.
0.2441.80.97Ptp.5444.1.S1_x_atBU869351hypothetical protein-6e-121At5g20010RAN-1O.I.H.G.S.X.
0.1525.30.96PtpAffx.1258.1.S1_s_atCV242350actin 1-5e-138At5g09810ACT7 (ACTIN 7)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.596.1GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.791.8GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.088.0GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.10878.2.S1_a_at, orthologous to the query gene, PtpAffx.45276.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6382.9Gma.10878.2.S1_a_atAt3g26730--2e-7At3g26730zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6080.7GmaAffx.46141.1.S1_atAt3g26730--1e+0At4g05060vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.5778.8GmaAffx.71118.1.A1_s_atAt3g26730--3e-9At4g34660SH3 domain-containing protein 2 (SH3P2)O.I.H.G.S.X.
0.5071.7GmaAffx.78614.1.S1_atAt3g26730--4e+0At1g77020DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.3853.3Gma.1538.2.A1_atAt3g26730--2e-5At4g27000ATRBP45CO.I.H.G.S.X.
0.3447.2Gma.11556.1.A1_atAt3g26730--1e-1At5g08080SYP132 (SYNTAXIN OF PLANTS 132)O.I.H.G.S.X.
0.3447.2Gma.7528.1.S1_s_atAt3g26730--5e-10At3g06720IMPA-1 (IMPORTIN ALPHA ISOFORM 1)O.I.H.G.S.X.
0.3346.1GmaAffx.46632.2.S1_atAt3g26730--3e-1At3g01250unknown proteinO.I.H.G.S.X.
0.2939.0GmaAffx.4391.1.S1_atAt3g26730--1e-73At3g19760eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putativeO.I.H.G.S.X.
0.1923.7Gma.7733.1.S1_atAt3g26730--3e-7At3g55070-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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