Co-expression analysis

Gene ID PtpAffx.450.5.A1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g50850: MAB1 (MACCI-BOU) (HF=2e-56)
Module size 8 genes
NF 0.57
%ile 87.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6488.40.95PtpAffx.450.5.A1_atCV278124hypothetical protein-2e-56At5g50850MAB1 (MACCI-BOU)O.I.H.G.S.X.
0.7192.60.95PtpAffx.56923.1.S1_atBI123150hypothetical protein-2e-77At3g24090glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminaseO.I.H.G.S.X.
0.5784.20.97PtpAffx.104716.1.S1_a_atCK096563hypothetical protein-3e-8At4g16444unknown proteinO.I.H.G.S.X.
0.5582.20.97PtpAffx.454.7.A1_s_atCV281713hypothetical protein-2e-100At3g56800CAM3 (CALMODULIN 3)O.I.H.G.S.X.
0.5078.60.97PtpAffx.5252.1.A1_atCV259090hypothetical protein-3e-61At3g22845emp24/gp25L/p24 protein-relatedO.I.H.G.S.X.
0.5078.60.97Ptp.5782.1.S1_atCV271204hypothetical protein-2e-77At5g47200ATRAB1AO.I.H.G.S.X.
0.4369.70.95Ptp.1042.1.A1_atCV266554hypothetical protein-4e-1At1g16170unknown proteinO.I.H.G.S.X.
0.3964.60.95Ptp.2415.1.A1_s_atCX175044hypothetical protein-6e-13At3g23300dehydration-responsive protein-relatedO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.395.8GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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