Co-expression analysis

Gene ID	PtpAffx.44935.3.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g13403: - (HF=9e-1)
Module size	6 genes
NF	0.14
%ile	28.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.92	PtpAffx.44935.3.A1_at	DN496114	-	-	9e-1	At3g13403	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.93	PtpAffx.58485.1.S1_at	CK103998	hypothetical protein	-	4e+0	At5g52070	agenet domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.95	PtpAffx.2014.1.A1_at	CV230434	porin/voltage-dependent anion-selective channel protein	-	9e-2	At5g67500	VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.94	PtpAffx.122979.1.A1_at	CK096803	SET domain protein	-	3e+0	At1g05085	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.94	PtpAffx.4030.1.S1_at	CN549228	hypothetical protein	-	5e-65	At2g20450	60S ribosomal protein L14 (RPL14A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.95	PtpAffx.26085.1.S1_a_at	BU884670	hypothetical protein	-	7e-78	At5g27600	LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	94.7	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.6	84.5	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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