Co-expression analysis

Gene ID PtpAffx.44935.3.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g13403: - (HF=9e-1)
Module size 6 genes
NF 0.14
%ile 28.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.92PtpAffx.44935.3.A1_atDN496114--9e-1At3g13403-O.I.H.G.S.X.
0.2747.10.93PtpAffx.58485.1.S1_atCK103998hypothetical protein-4e+0At5g52070agenet domain-containing proteinO.I.H.G.S.X.
0.1525.30.95PtpAffx.2014.1.A1_atCV230434porin/voltage-dependent anion-selective channel protein-9e-2At5g67500VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2)O.I.H.G.S.X.
0.1423.50.94PtpAffx.122979.1.A1_atCK096803SET domain protein-3e+0At1g05085unknown proteinO.I.H.G.S.X.
0.0711.60.94PtpAffx.4030.1.S1_atCN549228hypothetical protein-5e-65At2g2045060S ribosomal protein L14 (RPL14A)O.I.H.G.S.X.
0.069.80.95PtpAffx.26085.1.S1_a_atBU884670hypothetical protein-7e-78At5g27600LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.794.7GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.490.4GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.389.8GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM372043Clone1979_LPI5_N-_8w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.684.5GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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