Co-expression analysis

Gene ID	PtpAffx.4462.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g57260: BGL2 (BETA-1,3-GLUCANASE 2) (HF=3e-9)
Module size	6 genes
NF	0.43
%ile	72.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	0.90	PtpAffx.4462.1.S1_at	CX185631	hypothetical protein	-	3e-9	At3g57260	BGL2 (BETA-1,3-GLUCANASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.90	PtpAffx.77318.1.S1_x_at	CX658423	hypothetical protein	-	4e-2	At2g43570	chitinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.90	PtpAffx.7639.1.A1_at	BP935195	hypothetical protein	-	3e+0	At3g25130	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.92	PtpAffx.4462.1.S1_a_at	CX185631	hypothetical protein	-	3e-9	At3g57260	BGL2 (BETA-1,3-GLUCANASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.88	PtpAffx.75787.1.A1_s_at	CV268367	AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor	-	3e-1	At3g07880	Rho GDP-dissociation inhibitor family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.90	PtpAffx.249.47.A1_s_at	CV256610	-	-	1e-3	At4g11650	ATOSM34 (osmotin 34)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	94.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3	93.7	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3	93.7	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7	91.8	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the grape gene, 1615595_at, orthologous to the query gene, PtpAffx.4462.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.3	1615595_at	At3g57260	class I beta-1,3-glucanase	-	3e-3	At4g16260	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	O.I.	H.G.	S.X.	Please select
0.73	90.8	1616822_at	At3g57260	proline-rich protein 1 /// proline rich protein 1	-	2e-1	At1g12100	lipid binding	O.I.	H.G.	S.X.	Please select
0.70	88.6	1609629_at	At3g57260	hypothetical protein LOC100250476	-	3e-17	At5g13330	Rap2.6L (related to AP2 6L)	O.I.	H.G.	S.X.	Please select
0.66	85.1	1607449_s_at	At3g57260	proline-rich protein 1 /// proline rich protein 1	-	2e+0	At2g10940	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.62	83.3	1618517_at	At3g57260	hypothetical protein LOC100259328	-	2e+0	At3g12490	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.	Please select
0.61	83.2	1606705_at	At3g57260	hypothetical protein LOC100265189	-	2e-5	At3g13310	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	1620725_at	At3g57260	hypothetical protein LOC100249240	-	4e-1	At4g37445	-	O.I.	H.G.	S.X.	Please select
0.59	80.6	1621570_at	At3g57260	hypothetical protein LOC100255693	-	4e-5	At2g34070	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	79.8	1614374_s_at	At3g57260	similar to binding	-	2e-8	At2g29670	binding	O.I.	H.G.	S.X.	Please select
0.57	79.8	1618771_s_at	At3g57260	hypothetical protein LOC100262843	-	3e-4	At1g25560	TEM1 (TEMPRANILLO 1)	O.I.	H.G.	S.X.	Please select
0.56	79.4	1614803_at	At3g57260	proline-rich protein 1	-	2e+0	At2g10940	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.54	75.7	1609762_s_at	At3g57260	hypothetical protein LOC100257013	-	4e-19	At1g16270	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.54	75.7	1618998_at	At3g57260	-	-	5e-16	At4g01500	NGA4 (NGATHA4)	O.I.	H.G.	S.X.	Please select
0.53	75.2	1613672_at	At3g57260	hypothetical protein LOC100249746	-	4e-13	At3g13340	WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	1620628_at	At3g57260	neutral invertase	-	2e-37	At1g56560	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative	O.I.	H.G.	S.X.	Please select
0.47	67.7	1617361_at	At3g57260	hypothetical protein LOC100244017	-	3e-50	At4g35630	PSAT	O.I.	H.G.	S.X.	Please select
0.44	64.1	1613554_at	At3g57260	hypothetical protein LOC100244659	-	4e+0	At5g28640	AN3 (ANGUSTIFOLIA 3)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1614133_at	At3g57260	hypothetical protein LOC100255873	-	5e-2	At1g43800	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	O.I.	H.G.	S.X.	Please select
0.44	64.1	1611013_at	At3g57260	hypothetical protein LOC100243798	-	4e-1	At5g22890	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1607804_at	At3g57260	-	-	2e-45	At1g16270	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1613947_at	At3g57260	hypothetical protein LOC100253773	-	8e-3	At3g03520	phosphoesterase family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1618716_at	At3g57260	similar to Os06g0665100	-	1e-22	At5g44730	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	1621277_at	At3g57260	hypothetical protein LOC100252641	-	2e-24	At1g72820	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1608860_at	At3g57260	hypothetical protein LOC100241980	-	4e+0	At2g24390	-	O.I.	H.G.	S.X.	Please select
0.40	57.7	1622047_at	At3g57260	hypothetical protein LOC100256407	-	3e-8	At1g75960	AMP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.37	51.7	1611439_at	At3g57260	hypothetical protein LOC100251328	-	9e-3	At2g39650	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	1614931_at	At3g57260	hypothetical protein LOC100241227	-	3e-1	At5g04470	SIM (SIAMESE)	O.I.	H.G.	S.X.	Please select
0.37	51.7	1612678_at	At3g57260	hypothetical protein LOC100249647	-	3e-14	At1g67940	ATNAP3	O.I.	H.G.	S.X.	Please select
0.36	50.7	1612482_at	At3g57260	hypothetical protein LOC100258468	-	1e-9	At1g60440	ATPANK1 (PANTOTHENATE KINASE 1)	O.I.	H.G.	S.X.	Please select
0.35	48.5	1611428_at	At3g57260	hypothetical protein LOC100242068	-	1e+0	At5g48470	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	46.8	1622593_at	At3g57260	hypothetical protein LOC100242684	-	2e+0	At3g11820	SYP121 (SYNTAXIN OF PLANTS 121)	O.I.	H.G.	S.X.	Please select
0.33	45.7	1621937_at	At3g57260	hypothetical protein LOC100245655	-	2e-1	At4g02810	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	1615458_at	At3g57260	hypothetical protein LOC100255664	-	2e+0	At5g16490	RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.27	34.0	1615778_at	At3g57260	hypothetical protein LOC100253193	-	1e-3	At2g42670	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	1606659_s_at	At3g57260	hypothetical protein LOC100244564	-	2e-19	At1g29280	WRKY65	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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