Co-expression analysis

Gene ID	PtpAffx.4462.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g57260: BGL2 (BETA-1,3-GLUCANASE 2) (HF=3e-9)
Module size	6 genes
NF	0.43
%ile	72.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	0.90	PtpAffx.4462.1.S1_at	CX185631	hypothetical protein	-	3e-9	At3g57260	BGL2 (BETA-1,3-GLUCANASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.90	PtpAffx.77318.1.S1_x_at	CX658423	hypothetical protein	-	4e-2	At2g43570	chitinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.90	PtpAffx.7639.1.A1_at	BP935195	hypothetical protein	-	3e+0	At3g25130	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.92	PtpAffx.4462.1.S1_a_at	CX185631	hypothetical protein	-	3e-9	At3g57260	BGL2 (BETA-1,3-GLUCANASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.88	PtpAffx.75787.1.A1_s_at	CV268367	AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor	-	3e-1	At3g07880	Rho GDP-dissociation inhibitor family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.90	PtpAffx.249.47.A1_s_at	CV256610	-	-	1e-3	At4g11650	ATOSM34 (osmotin 34)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	94.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3	93.7	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3	93.7	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7	91.8	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.108832.1.S1_at, orthologous to the query gene, PtpAffx.4462.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	TaAffx.108832.1.S1_at	At3g57260	-	-	9e-1	At3g57072	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	TaAffx.6099.1.S1_at	At3g57260	-	-	1e+0	At3g03460	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	TaAffx.26327.1.S1_at	At3g57260	-	-	4e+0	At1g33340	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	O.I.	H.G.	S.X.	Please select
0.16	18.2	TaAffx.53641.1.S1_at	At3g57260	-	-	1e+1	At5g65495	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	TaAffx.108457.1.S1_at	At3g57260	-	-	4e+0	At4g33000	CBL10 (CALCINEURIN B-LIKE 10)	O.I.	H.G.	S.X.	Please select
0.14	15.8	TaAffx.6492.1.S1_at	At3g57260	-	-	4e+0	At3g10920	MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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