CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.4462.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g57260: BGL2 (BETA-1,3-GLUCANASE 2) (HF=3e-9)

Module size 6 genes

NF 0.43

%ile 72.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 96.0 0.90 PtpAffx.4462.1.S1_at CX185631 hypothetical protein - 3e-9 At3g57260 BGL2 (BETA-1,3-GLUCANASE 2) O.I. H.G. S.X.
0.55 82.2 0.90 PtpAffx.77318.1.S1_x_at CX658423 hypothetical protein - 4e-2 At2g43570 chitinase, putative O.I. H.G. S.X.
0.36 61.6 0.90 PtpAffx.7639.1.A1_at BP935195 hypothetical protein - 3e+0 At3g25130 unknown protein O.I. H.G. S.X.
0.36 61.6 0.92 PtpAffx.4462.1.S1_a_at CX185631 hypothetical protein - 3e-9 At3g57260 BGL2 (BETA-1,3-GLUCANASE 2) O.I. H.G. S.X.
0.29 50.5 0.88 PtpAffx.75787.1.A1_s_at CV268367 AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor - 3e-1 At3g07880 Rho GDP-dissociation inhibitor family protein O.I. H.G. S.X.
0.29 50.5 0.90 PtpAffx.249.47.A1_s_at CV256610 - - 1e-3 At4g11650 ATOSM34 (osmotin 34) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.7 94.7 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3 93.7 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3 93.7 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7 91.8 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the rice gene, Os03g0600600, orthologous to the query gene, PtpAffx.4462.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.70 88.4 Os03g0600600 At3g57260 - Beta-1,3-glucanase precursor 5e+0 At5g20330 BETAG4 O.I. H.G. S.X.
0.75 91.9 Os03g0780900 At3g57260 - Eukaryotic protein of unknown function DUF858family protein 3e-7 At5g44450 methyltransferase O.I. H.G. S.X.
0.62 81.5 Os11g0302850 At3g57260 - - 3e+0 At5g61200 - O.I. H.G. S.X.
0.58 77.0 Os01g0706300 At3g57260 - - 6e-1 At2g24692 unknown protein O.I. H.G. S.X.
0.58 77.0 Os06g0111300 At3g57260 - Protein prenyltransferase domain containingprotein 6e-3 At5g27270 EMB976 (EMBRYO DEFECTIVE 976) O.I. H.G. S.X.
0.56 76.3 Os03g0842100 At3g57260 - - 3e+0 At5g03710 unknown protein O.I. H.G. S.X.
0.46 60.9 Os05g0537200 At3g57260 - Myosin head, motor region domain containingprotein 1e-42 At1g17580 MYA1 (MYOSIN 1) O.I. H.G. S.X.
0.43 55.4 Os07g0668400 At3g57260 - - 8e-1 At4g27310 zinc finger (B-box type) family protein O.I. H.G. S.X.
0.42 53.9 Os03g0703800 At3g57260 - - 2e-1 At4g02340 epoxide hydrolase, putative O.I. H.G. S.X.
0.42 53.9 Os01g0672166 At3g57260 - - 5e-2 At1g50270 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.41 52.4 Os11g0113600 At3g57260 - - 3e+0 At5g09750 HEC3 (HECATE 3) O.I. H.G. S.X.
0.40 51.1 Os07g0408600 At3g57260 - - 3e+0 At5g11990 proline-rich family protein O.I. H.G. S.X.
0.38 46.9 Os06g0642200 At3g57260 - - 2e-1 At4g13310 CYP71A20 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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