Co-expression analysis

Gene ID	PtpAffx.4462.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g57260: BGL2 (BETA-1,3-GLUCANASE 2) (HF=3e-9)
Module size	6 genes
NF	0.43
%ile	72.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	0.90	PtpAffx.4462.1.S1_at	CX185631	hypothetical protein	-	3e-9	At3g57260	BGL2 (BETA-1,3-GLUCANASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.90	PtpAffx.77318.1.S1_x_at	CX658423	hypothetical protein	-	4e-2	At2g43570	chitinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.90	PtpAffx.7639.1.A1_at	BP935195	hypothetical protein	-	3e+0	At3g25130	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.92	PtpAffx.4462.1.S1_a_at	CX185631	hypothetical protein	-	3e-9	At3g57260	BGL2 (BETA-1,3-GLUCANASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.88	PtpAffx.75787.1.A1_s_at	CV268367	AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor	-	3e-1	At3g07880	Rho GDP-dissociation inhibitor family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.90	PtpAffx.249.47.A1_s_at	CV256610	-	-	1e-3	At4g11650	ATOSM34 (osmotin 34)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	94.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3	93.7	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3	93.7	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7	91.8	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the barley gene, EBro08_SQ007_H23_at, orthologous to the query gene, PtpAffx.4462.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.2	EBro08_SQ007_H23_at	At3g57260	-	-	8e-1	At1g02450	NIMIN1 (NIM1-INTERACTING 1)	O.I.	H.G.	S.X.	Please select
0.76	89.8	Contig19421_at	At3g57260	-	-	3e-1	At1g18380	-	O.I.	H.G.	S.X.	Please select
0.75	89.5	HVSMEg0010M12r2_at	At3g57260	-	-	2e-8	At1g74880	NDH-O (NAD(P)H:plastoquinone dehydrogenase complex subunit O)	O.I.	H.G.	S.X.	Please select
0.75	89.5	Contig245_s_at	At3g57260	-	-	2e+0	At4g16380	metal ion binding	O.I.	H.G.	S.X.	Please select
0.74	89.1	HY06F24u_x_at	At3g57260	-	-	1e+1	At5g05710	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.72	87.4	Contig22936_at	At3g57260	-	-	1e-1	At5g47180	vesicle-associated membrane family protein / VAMP family protein	O.I.	H.G.	S.X.	Please select
0.72	87.4	Contig23039_at	At3g57260	-	-	4e-2	At2g45920	U-box domain-containing protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	HVSMEm0018O23r2_at	At3g57260	-	-	1e-3	At4g23150	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.70	86.0	HVSMEl0006C17r2_x_at	At3g57260	-	-	1e+0	At4g32090	galactosyltransferase	O.I.	H.G.	S.X.	Please select
0.69	85.5	Contig14886_at	At3g57260	-	-	1e+0	At3g07860	unknown protein	O.I.	H.G.	S.X.	Please select
0.69	85.5	HA06j10r_at	At3g57260	-	-	2e+0	At4g21920	unknown protein	O.I.	H.G.	S.X.	Please select
0.68	85.1	Contig21533_at	At3g57260	-	-	2e+0	At1g24000	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.68	85.1	Contig13086_s_at	At3g57260	-	-	8e+0	At4g33040	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.68	85.1	HVSMEh0084N15r2_s_at	At3g57260	-	-	6e+0	At1g48510	cytochrome c oxidase assembly protein surfeit-related	O.I.	H.G.	S.X.	Please select
0.66	81.5	HA31G21r_at	At3g57260	-	-	2e+0	At5g17190	unknown protein	O.I.	H.G.	S.X.	Please select
0.66	81.5	baal1j07_at	At3g57260	-	-	5e-15	At4g30800	40S ribosomal protein S11 (RPS11B)	O.I.	H.G.	S.X.	Please select
0.66	81.5	Contig10097_at	At3g57260	-	-	4e-1	At3g16450	jacalin lectin family protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	EBma08_SQ003_L03_at	At3g57260	-	-	6e-2	At2g40060	protein binding / structural molecule	O.I.	H.G.	S.X.	Please select
0.63	80.3	HY02C19u_at	At3g57260	-	-	5e+0	At4g15610	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	HV_CEa0014H05r2_at	At3g57260	-	-	3e+0	At5g64850	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	Contig25915_at	At3g57260	-	-	3e-1	At2g30560	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	EBro02_SQ008_P15_at	At3g57260	-	-	1e+1	At5g43211	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	Contig12986_at	At3g57260	-	-	7e-13	At3g28007	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	HVSMEf0019H01r2_at	At3g57260	-	-	1e+1	At3g27460	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	Contig17900_at	At3g57260	-	-	6e+0	At4g05170	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.58	74.9	EBem04_SQ003_H15_at	At3g57260	-	-	3e+0	At5g33806	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	74.9	V00087.1_at	At3g57260	-	-	3e-1	At5g43525	-	O.I.	H.G.	S.X.	Please select
0.57	74.9	HVSMEg0002G01r2_x_at	At3g57260	-	-	6e+0	At5g39360	EDL2 (EID1-like 2)	O.I.	H.G.	S.X.	Please select
0.56	74.3	HS05N06r_at	At3g57260	-	-	9e-1	At1g79110	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.53	69.7	rbags18m16_at	At3g57260	-	-	2e+0	At2g35790	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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