CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.4462.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g57260: BGL2 (BETA-1,3-GLUCANASE 2) (HF=3e-9)

Module size 6 genes

NF 0.43

%ile 72.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 96.0 0.90 PtpAffx.4462.1.S1_at CX185631 hypothetical protein - 3e-9 At3g57260 BGL2 (BETA-1,3-GLUCANASE 2) O.I. H.G. S.X.
0.55 82.2 0.90 PtpAffx.77318.1.S1_x_at CX658423 hypothetical protein - 4e-2 At2g43570 chitinase, putative O.I. H.G. S.X.
0.36 61.6 0.90 PtpAffx.7639.1.A1_at BP935195 hypothetical protein - 3e+0 At3g25130 unknown protein O.I. H.G. S.X.
0.36 61.6 0.92 PtpAffx.4462.1.S1_a_at CX185631 hypothetical protein - 3e-9 At3g57260 BGL2 (BETA-1,3-GLUCANASE 2) O.I. H.G. S.X.
0.29 50.5 0.88 PtpAffx.75787.1.A1_s_at CV268367 AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor - 3e-1 At3g07880 Rho GDP-dissociation inhibitor family protein O.I. H.G. S.X.
0.29 50.5 0.90 PtpAffx.249.47.A1_s_at CV256610 - - 1e-3 At4g11650 ATOSM34 (osmotin 34) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.7 94.7 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3 93.7 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3 93.7 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7 91.8 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g57260, orthologous to the query gene, PtpAffx.4462.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.89 94.6 At3g57260 824893 BGL2 (BETA-1,3-GLUCANASE 2) beta 1,3-glucanase O.I. H.G. S.X.
0.89 94.6 At5g10380 830902 RING1 Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators. O.I. H.G. S.X.
0.67 81.6 At2g32680 817828 AtRLP23 (Receptor Like Protein 23) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. H.G. S.X.
0.67 81.6 At5g10760 830943 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PMFO O.I. H.G. S.X.
0.53 68.6 At1g08450 837365 CRT3 (CALRETICULIN 3) Encodes calreticulin CRT3. O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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