Co-expression analysis

Gene ID PtpAffx.4462.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g57260: BGL2 (BETA-1,3-GLUCANASE 2) (HF=3e-9)
Module size 6 genes
NF 0.43
%ile 72.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8096.00.90PtpAffx.4462.1.S1_atCX185631hypothetical protein-3e-9At3g57260BGL2 (BETA-1,3-GLUCANASE 2)O.I.H.G.S.X.
0.5582.20.90PtpAffx.77318.1.S1_x_atCX658423hypothetical protein-4e-2At2g43570chitinase, putativeO.I.H.G.S.X.
0.3661.60.90PtpAffx.7639.1.A1_atBP935195hypothetical protein-3e+0At3g25130unknown proteinO.I.H.G.S.X.
0.3661.60.92PtpAffx.4462.1.S1_a_atCX185631hypothetical protein-3e-9At3g57260BGL2 (BETA-1,3-GLUCANASE 2)O.I.H.G.S.X.
0.2950.50.88PtpAffx.75787.1.A1_s_atCV268367AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor-3e-1At3g07880Rho GDP-dissociation inhibitor family proteinO.I.H.G.S.X.
0.2950.50.90PtpAffx.249.47.A1_s_atCV256610--1e-3At4g11650ATOSM34 (osmotin 34)O.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.794.7GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.393.7GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.393.7GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.791.8GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g57260, orthologous to the query gene, PtpAffx.4462.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.8994.6At3g57260824893BGL2 (BETA-1,3-GLUCANASE 2)beta 1,3-glucanaseO.I.H.G.S.X.
0.8994.6At5g10380830902RING1Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators.O.I.H.G.S.X.
0.6781.6At2g32680817828AtRLP23 (Receptor Like Protein 23)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.H.G.S.X.
0.6781.6At5g10760830943aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PMFOO.I.H.G.S.X.
0.5368.6At1g08450837365CRT3 (CALRETICULIN 3)Encodes calreticulin CRT3.O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

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