CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.4462.1.S1_a_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g57260: BGL2 (BETA-1,3-GLUCANASE 2) (HF=3e-9)

Module size 6 genes

NF 0.25

%ile 45.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.92 PtpAffx.4462.1.S1_a_at CX185631 hypothetical protein - 3e-9 At3g57260 BGL2 (BETA-1,3-GLUCANASE 2) O.I. H.G. S.X.
0.44 71.9 0.90 PtpAffx.4462.1.S1_at CX185631 hypothetical protein - 3e-9 At3g57260 BGL2 (BETA-1,3-GLUCANASE 2) O.I. H.G. S.X.
0.36 61.6 0.90 PtpAffx.77318.1.S1_x_at CX658423 hypothetical protein - 4e-2 At2g43570 chitinase, putative O.I. H.G. S.X.
0.23 40.5 0.90 PtpAffx.67455.1.S1_at BU874579 hypothetical protein - 7e-9 At1g09970 LRR XI-23 O.I. H.G. S.X.
0.15 25.3 0.91 PtpAffx.24353.1.A1_a_at CV274454 hypothetical protein - 3e-1 At1g26250 proline-rich extensin, putative O.I. H.G. S.X.
0.14 23.5 0.90 PtpAffx.224250.1.S1_at pmrna42635 hypothetical protein - 1e-12 At1g01340 ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.9 96.5 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7 91.8 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6 91.3 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the rice gene, Os03g0600600, orthologous to the query gene, PtpAffx.4462.1.S1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.70 88.4 Os03g0600600 At3g57260 - Beta-1,3-glucanase precursor 5e+0 At5g20330 BETAG4 O.I. H.G. S.X.
0.75 91.9 Os03g0780900 At3g57260 - Eukaryotic protein of unknown function DUF858family protein 3e-7 At5g44450 methyltransferase O.I. H.G. S.X.
0.62 81.5 Os11g0302850 At3g57260 - - 3e+0 At5g61200 - O.I. H.G. S.X.
0.58 77.0 Os01g0706300 At3g57260 - - 6e-1 At2g24692 unknown protein O.I. H.G. S.X.
0.58 77.0 Os06g0111300 At3g57260 - Protein prenyltransferase domain containingprotein 6e-3 At5g27270 EMB976 (EMBRYO DEFECTIVE 976) O.I. H.G. S.X.
0.56 76.3 Os03g0842100 At3g57260 - - 3e+0 At5g03710 unknown protein O.I. H.G. S.X.
0.46 60.9 Os05g0537200 At3g57260 - Myosin head, motor region domain containingprotein 1e-42 At1g17580 MYA1 (MYOSIN 1) O.I. H.G. S.X.
0.43 55.4 Os07g0668400 At3g57260 - - 8e-1 At4g27310 zinc finger (B-box type) family protein O.I. H.G. S.X.
0.42 53.9 Os03g0703800 At3g57260 - - 2e-1 At4g02340 epoxide hydrolase, putative O.I. H.G. S.X.
0.42 53.9 Os01g0672166 At3g57260 - - 5e-2 At1g50270 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.41 52.4 Os11g0113600 At3g57260 - - 3e+0 At5g09750 HEC3 (HECATE 3) O.I. H.G. S.X.
0.40 51.1 Os07g0408600 At3g57260 - - 3e+0 At5g11990 proline-rich family protein O.I. H.G. S.X.
0.38 46.9 Os06g0642200 At3g57260 - - 2e-1 At4g13310 CYP71A20 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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