CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.4462.1.S1_a_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g57260: BGL2 (BETA-1,3-GLUCANASE 2) (HF=3e-9)

Module size 6 genes

NF 0.25

%ile 45.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.92 PtpAffx.4462.1.S1_a_at CX185631 hypothetical protein - 3e-9 At3g57260 BGL2 (BETA-1,3-GLUCANASE 2) O.I. H.G. S.X.
0.44 71.9 0.90 PtpAffx.4462.1.S1_at CX185631 hypothetical protein - 3e-9 At3g57260 BGL2 (BETA-1,3-GLUCANASE 2) O.I. H.G. S.X.
0.36 61.6 0.90 PtpAffx.77318.1.S1_x_at CX658423 hypothetical protein - 4e-2 At2g43570 chitinase, putative O.I. H.G. S.X.
0.23 40.5 0.90 PtpAffx.67455.1.S1_at BU874579 hypothetical protein - 7e-9 At1g09970 LRR XI-23 O.I. H.G. S.X.
0.15 25.3 0.91 PtpAffx.24353.1.A1_a_at CV274454 hypothetical protein - 3e-1 At1g26250 proline-rich extensin, putative O.I. H.G. S.X.
0.14 23.5 0.90 PtpAffx.224250.1.S1_at pmrna42635 hypothetical protein - 1e-12 At1g01340 ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.9 96.5 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7 91.8 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6 91.3 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g57260, orthologous to the query gene, PtpAffx.4462.1.S1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.89 94.6 At3g57260 824893 BGL2 (BETA-1,3-GLUCANASE 2) beta 1,3-glucanase O.I. H.G. S.X.
0.89 94.6 At5g10380 830902 RING1 Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators. O.I. H.G. S.X.
0.67 81.6 At2g32680 817828 AtRLP23 (Receptor Like Protein 23) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. H.G. S.X.
0.67 81.6 At5g10760 830943 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PMFO O.I. H.G. S.X.
0.53 68.6 At1g08450 837365 CRT3 (CALRETICULIN 3) Encodes calreticulin CRT3. O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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