Co-expression analysis

Gene ID	PtpAffx.43839.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g09960: STK (SEEDSTICK) (HF=3e-23)
Module size	7 genes
NF	0.45
%ile	74.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	0.86	PtpAffx.43839.1.S1_at	DN501305	hypothetical protein	-	3e-23	At4g09960	STK (SEEDSTICK)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.85	PtpAffx.207694.1.S1_at	pmrna15268	hypothetical protein	-	5e+0	At5g40860	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.86	PtpAffx.205324.1.S1_at	pmrna10548	hypothetical protein	-	1e-1	At4g37110	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.85	PtpAffx.200958.1.S1_at	pmrna1878	hypothetical protein	-	4e-2	At1g05065	CLE20 (CLAVATA3/ESR-RELATED 20)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.86	PtpAffx.5743.1.A1_at	CV236133	-	-	2e-2	At1g36640	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.85	PtpAffx.34101.1.S1_at	DN501612	-	-	4e-1	At1g25330	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.86	PtpAffx.153815.1.A1_at	CV241744	-	-	2e-1	At1g77765	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	97.7	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.5	83.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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