CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.43837.1.A1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At4g24026: unknown protein (HF=3e-6)

Module size 6 genes

NF 0.05

%ile 10.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 73.7 0.90 PtpAffx.43837.1.A1_s_at CV256587 hypothetical protein - 3e-6 At4g24026 unknown protein O.I. H.G. S.X.
0.36 61.6 0.92 PtpAffx.8523.2.S1_a_at BI069505 hypothetical protein - 4e-32 At5g56530 unknown protein O.I. H.G. S.X.
0.29 50.5 0.92 PtpAffx.128165.1.A1_a_at CV241610 hypothetical protein - 1e+0 At1g76930 ATEXT4 (EXTENSIN 4) O.I. H.G. S.X.
0.14 23.5 0.90 PtpAffx.206196.1.S1_at pmrna12304 hypothetical protein - 4e-19 At2g19090 unknown protein O.I. H.G. S.X.
0.10 16.3 0.92 PtpAffx.254.1.S1_s_at CV268035 hypothetical protein - 1e-20 At2g47115 unknown protein O.I. H.G. S.X.
0.01 2.2 0.89 PtpAffx.30944.1.A1_at CV246079 hypothetical protein - 4e-22 At4g35490 MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	0.91	PtpAffx.27667.1.S1_at	DN491641	hypothetical protein	-	2e+0	At1g07880	ATMPK13	O.I.	H.G.	S.X.
0.40	67.0	0.92	PtpAffx.207323.1.S1_s_at	pmrna14519	hypothetical protein	-	1e-21	At5g66600	unknown protein	O.I.	H.G.	S.X.
0.28	50.5	0.88	PtpAffx.21205.4.S1_a_at	CK112370	hypothetical protein	-	9e-8	At1g01380	ETC1 (ENHANCER OF TRY AND CPC 1)	O.I.	H.G.	S.X.
0.27	47.1	0.86	PtpAffx.114669.1.A1_at	CV249639	-	-	1e+0	At3g48540	cytidine/deoxycytidylate deaminase family protein	O.I.	H.G.	S.X.
0.26	45.2	0.87	PtpAffx.18329.1.S1_at	CV252748	-	-	5e-2	At5g19880	peroxidase, putative	O.I.	H.G.	S.X.
0.25	43.6	0.89	PtpAffx.200945.1.S1_at	pmrna1857	hypothetical protein	-	3e-2	At2g34620	mitochondrial transcription termination factor-related / mTERF-related	O.I.	H.G.	S.X.
0.22	38.3	0.89	PtpAffx.202621.1.S1_s_at	pmrna5240	hypothetical protein	-	1e-12	At3g25400	-	O.I.	H.G.	S.X.
0.19	32.7	0.90	PtpAffx.217204.1.S1_at	pmrna32378	regulatory subunit of cyclin-dependent kinase	-	3e-48	At2g27960	CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)	O.I.	H.G.	S.X.
0.18	30.8	0.88	PtpAffx.26548.3.A1_at	CV254371	hypothetical protein	-	4e+0	At4g02830	unknown protein	O.I.	H.G.	S.X.
0.17	29.1	0.85	PtpAffx.208260.1.S1_at	pmrna16439	hypothetical protein	-	1e-28	At1g67720	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.5 94.3 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3 89.8 GSM327358 Populus balsamifera_20071015_Seedling_continuous_light_6d_2 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9 87.2 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9 87.2 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8 86.4 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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