Co-expression analysis

Gene ID	PtpAffx.43837.1.A1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g24026: unknown protein (HF=3e-6)
Module size	6 genes
NF	0.05
%ile	10.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	73.7	0.90	PtpAffx.43837.1.A1_s_at	CV256587	hypothetical protein	-	3e-6	At4g24026	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.92	PtpAffx.8523.2.S1_a_at	BI069505	hypothetical protein	-	4e-32	At5g56530	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.92	PtpAffx.128165.1.A1_a_at	CV241610	hypothetical protein	-	1e+0	At1g76930	ATEXT4 (EXTENSIN 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.90	PtpAffx.206196.1.S1_at	pmrna12304	hypothetical protein	-	4e-19	At2g19090	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.92	PtpAffx.254.1.S1_s_at	CV268035	hypothetical protein	-	1e-20	At2g47115	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.89	PtpAffx.30944.1.A1_at	CV246079	hypothetical protein	-	4e-22	At4g35490	MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	94.3	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

A co-expression module including the maize gene, Zm.6246.2.A1_at, orthologous to the query gene, PtpAffx.43837.1.A1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	96.8	Zm.6246.2.A1_at	At4g24026	-	-	9e-7	At2g22080	unknown protein	O.I.	H.G.	S.X.	Please select
0.81	94.3	Zm.6247.1.S1_at	At4g24026	alpha zein 19kDa D1	-	5e-1	At5g62360	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.68	86.1	Zm.7035.1.A1_at	At4g24026	hypothetical protein LOC100280000	-	3e+0	At3g19130	ATRBP47B (RNA-binding protein 47B)	O.I.	H.G.	S.X.	Please select
0.54	69.8	Zm.7120.1.S1_a_at	At4g24026	hypothetical protein LOC100193616	-	2e-6	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.51	66.4	Zm.7144.1.A1_at	At4g24026	chalcone isomerase 3	-	2e+0	At1g73260	trypsin and protease inhibitor family protein / Kunitz family protein	O.I.	H.G.	S.X.	Please select
0.51	66.4	Zm.3526.1.S1_at	At4g24026	hypothetical protein LOC100272649	-	3e+0	At2g01890	PAP8 (PURPLE ACID PHOSPHATASE 8)	O.I.	H.G.	S.X.	Please select
0.48	61.3	Zm.1323.1.S1_x_at	At4g24026	hypothetical protein LOC100275312	-	6e+0	At3g30840	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.13232.1.S1_at	At4g24026	tyrosine/DOPA decarboxylase 2	-	9e-1	At2g04630	NRPB6B	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.16049.2.A1_x_at	At4g24026	-	-	3e-4	At5g03850	40S ribosomal protein S28 (RPS28B)	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.14471.3.S1_at	At4g24026	hypothetical protein LOC100191368	-	2e-25	At2g44120	60S ribosomal protein L7 (RPL7C)	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.16593.4.S1_at	At4g24026	hypothetical protein LOC100194160	-	2e-4	At5g51840	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	56.4	Zm.7091.1.A1_x_at	At4g24026	chlorophyll a/b-binding apoprotein CP24 precursor	-	3e-15	At1g15820	LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6)	O.I.	H.G.	S.X.	Please select
0.45	56.4	Zm.16513.7.A1_at	At4g24026	hypothetical protein LOC100191561	-	0	At5g09810	ACT7 (ACTIN 7)	O.I.	H.G.	S.X.	Please select
0.45	56.4	Zm.7144.1.S1_at	At4g24026	-	-	2e+0	At1g73260	trypsin and protease inhibitor family protein / Kunitz family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.3219.1.S1_a_at	At4g24026	beta-expansin 9 protein	-	9e+0	At4g32950	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.6113.1.A1_at	At4g24026	-	-	7e-2	At4g22745	MBD1	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.3217.1.A1_at	At4g24026	hypothetical protein LOC100193166	-	4e-12	At1g63900	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.7121.1.A1_at	At4g24026	hypothetical protein LOC100191328	-	2e-5	At3g12120	FAD2 (FATTY ACID DESATURASE 2)	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.6482.1.A1_at	At4g24026	hypothetical protein LOC100216804	-	5e-1	At2g46050	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.16259.1.A1_x_at	At4g24026	hypothetical protein LOC100273269	-	1e-6	At4g27230	HTA2 (histone H2A)	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.16534.1.S1_at	At4g24026	-	-	8e+0	At5g04350	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.14473.1.A1_a_at	At4g24026	-	-	1e-10	At2g23350	PAB4 (POLY(A) BINDING PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.6103.2.S1_at	At4g24026	UBA and UBX domain-containing protein	-	2e-1	At4g04210	PUX4	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.14507.1.A1_a_at	At4g24026	glycosyl hydrolases family 16 protein	-	1e-2	At1g11545	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.16967.1.A1_at	At4g24026	-	-	2e+0	At1g12090	ELP (EXTENSIN-LIKE PROTEIN)	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.7328.1.S1_at	At4g24026	kinesin-like protein1	-	1e-13	At4g24170	kinesin motor family protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.3743.2.S1_at	At4g24026	-	-	2e+0	At5g04045	Expressed protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.7090.1.S1_at	At4g24026	hypothetical protein LOC100191899	-	6e+0	At5g01740	-	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.7034.2.A1_a_at	At4g24026	hypothetical protein LOC100279884	-	1e+0	At4g18080	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.5190.1.A1_at	At4g24026	Pyruvate kinase-like	-	9e-44	At5g52920	PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.6061.1.S1_at	At4g24026	hypothetical protein LOC100192928	-	2e-46	At5g20570	RBX1 (RING-BOX 1)	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.606.1.A2_s_at	At4g24026	plasma membrane integral protein ZmPIP2-2 /// plasma membrane intrinsic protein2	-	1e-37	At2g37180	RD28 (RESPONSIVE TO DESICCATION 28)	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.5823.1.A1_at	At4g24026	hypothetical protein LOC100194104	-	2e-10	At1g14310	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.16532.4.S1_x_at	At4g24026	60S ribosomal protein L18a	-	7e-68	At2g34480	60S ribosomal protein L18A (RPL18aB)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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