Co-expression analysis

Gene ID	PtpAffx.43837.1.A1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g24026: unknown protein (HF=3e-6)
Module size	6 genes
NF	0.05
%ile	10.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	73.7	0.90	PtpAffx.43837.1.A1_s_at	CV256587	hypothetical protein	-	3e-6	At4g24026	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.92	PtpAffx.8523.2.S1_a_at	BI069505	hypothetical protein	-	4e-32	At5g56530	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.92	PtpAffx.128165.1.A1_a_at	CV241610	hypothetical protein	-	1e+0	At1g76930	ATEXT4 (EXTENSIN 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.90	PtpAffx.206196.1.S1_at	pmrna12304	hypothetical protein	-	4e-19	At2g19090	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.92	PtpAffx.254.1.S1_s_at	CV268035	hypothetical protein	-	1e-20	At2g47115	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.89	PtpAffx.30944.1.A1_at	CV246079	hypothetical protein	-	4e-22	At4g35490	MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	94.3	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

A co-expression module including the grape gene, 1614969_at, orthologous to the query gene, PtpAffx.43837.1.A1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.3	1614969_at	At4g24026	hypothetical protein LOC100252305	-	3e+0	At4g00390	transcription regulator	O.I.	H.G.	S.X.	Please select
0.44	64.1	1619638_at	At4g24026	hypothetical protein LOC100243143	-	1e-1	At3g19900	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	1620279_at	At4g24026	hypothetical protein LOC100255680	-	1e+0	At3g06870	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	1614617_at	At4g24026	hypothetical protein LOC100251323	-	3e-7	At4g00752	UBX domain-containing protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	1622370_s_at	At4g24026	hypothetical protein LOC100241279	-	5e+0	At5g07572	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	1606906_at	At4g24026	hypothetical LOC100257222	-	2e-1	At1g15360	SHN1 (SHINE 1)	O.I.	H.G.	S.X.	Please select
0.35	48.5	1607860_at	At4g24026	hypothetical protein LOC100242411	-	3e-1	At5g08060	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1610407_at	At4g24026	hypothetical protein LOC100256446	-	4e-27	At5g42080	ADL1 (ARABIDOPSIS DYNAMIN-LIKE PROTEIN)	O.I.	H.G.	S.X.	Please select
0.32	43.1	1619247_at	At4g24026	hypothetical protein LOC100256712	-	7e-11	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	1606528_at	At4g24026	hypothetical protein LOC100241598	-	2e-8	At1g07480	transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L)	O.I.	H.G.	S.X.	Please select
0.29	37.7	1615269_at	At4g24026	hypothetical protein LOC100245841	-	1e+0	At4g15250	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	1616079_at	At4g24026	hypothetical LOC100255014	-	3e-21	At4g03340	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	1609191_s_at	At4g24026	hypothetical protein LOC100258056	-	0	At5g26751	ATSK11	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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