Co-expression analysis

Gene ID	PtpAffx.43837.1.A1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g24026: unknown protein (HF=3e-6)
Module size	6 genes
NF	0.05
%ile	10.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	73.7	0.90	PtpAffx.43837.1.A1_s_at	CV256587	hypothetical protein	-	3e-6	At4g24026	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.92	PtpAffx.8523.2.S1_a_at	BI069505	hypothetical protein	-	4e-32	At5g56530	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.92	PtpAffx.128165.1.A1_a_at	CV241610	hypothetical protein	-	1e+0	At1g76930	ATEXT4 (EXTENSIN 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.90	PtpAffx.206196.1.S1_at	pmrna12304	hypothetical protein	-	4e-19	At2g19090	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.92	PtpAffx.254.1.S1_s_at	CV268035	hypothetical protein	-	1e-20	At2g47115	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.89	PtpAffx.30944.1.A1_at	CV246079	hypothetical protein	-	4e-22	At4g35490	MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	94.3	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

A co-expression module including the barley gene, Contig3265_s_at, orthologous to the query gene, PtpAffx.43837.1.A1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	Contig3265_s_at	At4g24026	-	-	3e-2	At2g35910	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.87	95.0	Contig5242_at	At4g24026	-	-	3e-1	At2g30560	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	Contig5342_at	At4g24026	-	-	4e-3	At3g56150	EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C)	O.I.	H.G.	S.X.	Please select
0.82	93.1	Contig3963_s_at	At4g24026	-	-	7e-39	At4g19210	ATRLI2	O.I.	H.G.	S.X.	Please select
0.75	89.5	HA28J12r_s_at	At4g24026	-	-	1e+0	At3g23255	unknown protein	O.I.	H.G.	S.X.	Please select
0.72	87.4	Contig3856_at	At4g24026	-	-	1e-19	At1g52600	signal peptidase, putative	O.I.	H.G.	S.X.	Please select
0.72	87.4	Contig2826_at	At4g24026	-	-	1e-21	At3g44110	ATJ3	O.I.	H.G.	S.X.	Please select
0.72	87.4	Contig8436_s_at	At4g24026	-	-	7e-2	At5g40950	RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27)	O.I.	H.G.	S.X.	Please select
0.70	86.0	HV05M01u_x_at	At4g24026	-	-	8e+0	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	H.G.	S.X.	Please select
0.70	86.0	Contig5574_at	At4g24026	-	-	2e-11	At4g30210	ATR2 (ARABIDOPSIS P450 REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.56	74.3	Contig4494_s_at	At4g24026	-	-	5e+0	At5g55508	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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