Co-expression analysis

Gene ID	PtpAffx.42410.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g64140: - (HF=1e-20)
Module size	10 genes
NF	0.51
%ile	82.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	88.4	0.96	PtpAffx.42410.1.S1_s_at	BP922740	hypothetical protein	-	1e-20	At1g64140	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.96	PtpAffx.129323.1.S1_s_at	CN522980	hypothetical protein	-	4e+0	At5g47175	LCR3 (Low-molecular-weight cysteine-rich 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.97	Ptp.5819.1.S1_at	CK114175	hypothetical protein	-	3e-18	At5g59420	ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.97	PtpAffx.63988.2.S1_s_at	BU833503	hypothetical protein	-	3e-17	At5g57580	calmodulin-binding protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	0.97	PtpAffx.42410.1.S1_at	BP922740	hypothetical protein	-	1e-20	At1g64140	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	PtpAffx.139845.1.S1_at	CA926648	-	-	1e-16	At5g58620	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	Ptp.3857.1.S1_s_at	BU884442	hypothetical protein	-	6e-31	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.97	PtpAffx.131455.1.S1_s_at	CK102810	hypothetical protein	-	7e-39	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.97	PtpAffx.116322.1.S1_at	CK106873	histone acetyltransferase /// histone acetyltransferase	-	1e-34	At1g79000	HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.97	PtpAffx.146086.1.S1_s_at	CX180124	hypothetical protein	-	3e-20	At5g38830	tRNA synthetase class I (C) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.3	89.8	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8	86.4	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.6	84.5	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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