Co-expression analysis

Gene ID PtpAffx.42238.1.A1_s_at
Gene name lysine/histidine transporter
Homology with ArabidopsisSimilar to At1g48640: lysine and histidine specific transporter, putative (HF=6e-6)
Module size 7 genes
NF 0.31
%ile 55.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6086.00.94PtpAffx.42238.1.A1_s_atBP933309lysine/histidine transporter-6e-6At1g48640lysine and histidine specific transporter, putativeO.I.H.G.S.X.
0.5582.20.94PtpAffx.152030.1.S1_atCA822109--2e-33At5g40780LHT1O.I.H.G.S.X.
0.4369.70.93PtpAffx.152030.1.S1_s_atCA822109lysine/histidine transporter-2e-33At5g40780LHT1O.I.H.G.S.X.
0.3661.60.94PtpAffx.213838.1.S1_atpmrna27002hypothetical protein-8e-26At4g13630unknown proteinO.I.H.G.S.X.
0.2950.50.94PtpAffx.21874.1.S1_a_atCV235129hypothetical protein-2e-2At5g41210ATGSTT1 (GLUTATHIONE S-TRANSFERASE THETA 1)O.I.H.G.S.X.
0.2136.50.94PtpAffx.33230.1.S1_a_atCV246411--2e-96At4g33430BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE)O.I.H.G.S.X.
0.1219.60.94PtpAffx.37313.1.A1_atCV256677hypothetical protein-5e-47At3g26020serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.092.9GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.389.8GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.188.6GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage