Co-expression analysis

Gene ID PtpAffx.42141.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g62540: UBC3 (ubiquitin-conjugating enzyme 3) (HF=2e+0)
Module size 7 genes
NF 0.45
%ile 74.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6086.00.88PtpAffx.42141.1.S1_atCK090701--2e+0At5g62540UBC3 (ubiquitin-conjugating enzyme 3)O.I.H.G.S.X.
0.6791.10.93Ptp.5642.1.S1_s_atCX654173hypothetical protein-1e-36At3g5258040S ribosomal protein S14 (RPS14C)O.I.H.G.S.X.
0.4471.90.95PtpAffx.3566.2.S1_atDN485687hypothetical protein-5e-16At1g09760U2A' (U2 small nuclear ribonucleoprotein A)O.I.H.G.S.X.
0.4471.90.95Ptp.221.1.S1_s_atCF233014hypothetical protein-2e-6At5g15610proteasome family proteinO.I.H.G.S.X.
0.3357.50.93Ptp.2085.2.S1_s_atCF231740hypothetical protein-2e-30At1g22300GRF10 (GENERAL REGULATORY FACTOR 10)O.I.H.G.S.X.
0.3153.70.91PtpAffx.142.1.S1_s_atCV253962hypothetical protein-2e-3At1g10390nucleoporin family proteinO.I.H.G.S.X.
0.3153.70.93PtpAffx.216715.1.S1_a_atpmrna31674hypothetical protein-3e-1At1g10270GRP23 (GLUTAMINE-RICH PROTEIN23)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.395.8GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.295.6GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.892.1GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM328274Populus x canescens leaf hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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