Co-expression analysis

Gene ID	PtpAffx.42141.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g62540: UBC3 (ubiquitin-conjugating enzyme 3) (HF=2e+0)
Module size	7 genes
NF	0.45
%ile	74.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	0.88	PtpAffx.42141.1.S1_at	CK090701	-	-	2e+0	At5g62540	UBC3 (ubiquitin-conjugating enzyme 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.93	Ptp.5642.1.S1_s_at	CX654173	hypothetical protein	-	1e-36	At3g52580	40S ribosomal protein S14 (RPS14C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.95	PtpAffx.3566.2.S1_at	DN485687	hypothetical protein	-	5e-16	At1g09760	U2A' (U2 small nuclear ribonucleoprotein A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.95	Ptp.221.1.S1_s_at	CF233014	hypothetical protein	-	2e-6	At5g15610	proteasome family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.93	Ptp.2085.2.S1_s_at	CF231740	hypothetical protein	-	2e-30	At1g22300	GRF10 (GENERAL REGULATORY FACTOR 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.91	PtpAffx.142.1.S1_s_at	CV253962	hypothetical protein	-	2e-3	At1g10390	nucleoporin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.93	PtpAffx.216715.1.S1_a_at	pmrna31674	hypothetical protein	-	3e-1	At1g10270	GRP23 (GLUTAMINE-RICH PROTEIN23)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	95.8	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.8	92.1	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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