CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.41755.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g48030: GFA2 (GAMETOPHYTIC FACTOR 2) (HF=3e-2)

Module size 6 genes

NF 0.51

%ile 81.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 92.6 0.94 PtpAffx.41755.1.S1_at DN499227 hypothetical protein - 3e-2 At5g48030 GFA2 (GAMETOPHYTIC FACTOR 2) O.I. H.G. S.X.
0.60 86.0 0.94 Ptp.3621.1.S1_at DN492641 - - 7e-2 At3g60328 unknown protein O.I. H.G. S.X.
0.57 84.2 0.93 PtpAffx.48049.1.S1_at DN489796 hypothetical protein - 5e+0 At5g24410 glucosamine/galactosamine-6-phosphate isomerase-related O.I. H.G. S.X.
0.47 74.6 0.94 Ptp.2232.1.S1_at CK089340 - - 5e+0 At4g11040 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.31 53.7 0.94 Ptp.607.1.S1_at CK087237 hypothetical protein - 1e-17 At5g54680 ILR3 (iaa-leucine resistant3) O.I. H.G. S.X.
0.30 52.0 0.94 PtpAffx.16390.1.S1_at DN496341 - - 6e+0 At1g29620 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	73.7	0.89	Ptp.1735.2.A1_at	CK093398	hypothetical protein	-	2e+0	At1g70660	MMZ2 (MMS ZWEI HOMOLOGE 2)	O.I.	H.G.	S.X.
0.43	69.7	0.91	PtpAffx.144930.1.S1_at	BU887947	hypothetical protein	-	3e+0	At5g38320	unknown protein	O.I.	H.G.	S.X.
0.42	68.6	0.88	PtpAffx.26621.1.A1_s_at	CK089830	hypothetical protein	-	2e+0	At5g18404	unknown protein	O.I.	H.G.	S.X.
0.40	67.0	0.91	PtpAffx.19887.1.S1_at	CK110507	hypothetical protein	-	7e-1	At2g19320	unknown protein	O.I.	H.G.	S.X.
0.40	67.0	0.91	Ptp.3543.1.S1_at	DN492978	hypothetical protein	-	1e-14	At1g24120	ARL1 (ARG1-LIKE 1)	O.I.	H.G.	S.X.
0.40	67.0	0.92	Ptp.5151.2.S1_at	DN490233	hypothetical protein	-	3e-1	At3g51325	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.38	63.7	0.92	PtpAffx.144653.2.A1_at	CK089805	heavy metal ATPase	-	3e+0	At4g37445	-	O.I.	H.G.	S.X.
0.35	59.7	0.89	PtpAffx.2631.1.S1_at	BU873170	hypothetical protein	-	7e-1	At5g46500	-	O.I.	H.G.	S.X.
0.33	57.5	0.91	PtpAffx.33061.1.A1_at	CK087387	-	-	1e+0	Atcg01080	-	O.I.	H.G.	S.X.
0.33	57.5	0.92	PtpAffx.202952.1.S1_at	pmrna5840	hypothetical protein	-	2e-12	At1g79840	GL2 (GLABRA 2)	O.I.	H.G.	S.X.
0.31	53.7	0.93	Ptp.923.1.A1_at	CK089489	-	-	8e-1	At5g45670	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.
0.30	52.0	0.88	PtpAffx.65218.1.A1_at	CK090369	-	-	1e+0	At4g26020	-	O.I.	H.G.	S.X.
0.29	50.5	0.89	PtpAffx.67683.1.S1_at	DN487899	-	-	6e+0	At1g73390	-	O.I.	H.G.	S.X.
0.27	47.1	0.91	PtpAffx.162497.1.S1_at	CF232739	hypothetical protein	-	1e-2	At1g51040	phosphatidylinositol 4-kinase, putative	O.I.	H.G.	S.X.
0.27	47.1	0.90	PtpAffx.58472.1.S1_at	CK104436	-	-	7e+0	At5g41640	unknown protein	O.I.	H.G.	S.X.
0.25	43.6	0.87	PtpAffx.54578.1.S1_at	DN496708	-	-	6e-1	At4g00940	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.
0.25	43.6	0.93	Ptp.1118.1.A1_at	CK090264	hypothetical protein	-	9e-1	At4g31700	RPS6 (RIBOSOMAL PROTEIN S6)	O.I.	H.G.	S.X.
0.25	43.6	0.93	Ptp.1919.1.A1_at	CK092679	-	-	4e-2	At5g40180	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.9 95.1 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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