Co-expression analysis

Gene ID	PtpAffx.41755.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g48030: GFA2 (GAMETOPHYTIC FACTOR 2) (HF=3e-2)
Module size	6 genes
NF	0.51
%ile	81.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	0.94	PtpAffx.41755.1.S1_at	DN499227	hypothetical protein	-	3e-2	At5g48030	GFA2 (GAMETOPHYTIC FACTOR 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.94	Ptp.3621.1.S1_at	DN492641	-	-	7e-2	At3g60328	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.93	PtpAffx.48049.1.S1_at	DN489796	hypothetical protein	-	5e+0	At5g24410	glucosamine/galactosamine-6-phosphate isomerase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.94	Ptp.2232.1.S1_at	CK089340	-	-	5e+0	At4g11040	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.94	Ptp.607.1.S1_at	CK087237	hypothetical protein	-	1e-17	At5g54680	ILR3 (iaa-leucine resistant3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.94	PtpAffx.16390.1.S1_at	DN496341	-	-	6e+0	At1g29620	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	95.1	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the grape gene, 1622758_at, orthologous to the query gene, PtpAffx.41755.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	1622758_at	At5g48030	hypothetical protein LOC100259686	-	9e-14	At5g48030	GFA2 (GAMETOPHYTIC FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.29	37.7	1616347_at	At5g48030	hypothetical protein LOC100257625	-	2e-34	At2g24360	serine/threonine/tyrosine kinase, putative	O.I.	H.G.	S.X.	Please select
0.27	34.0	1618241_at	At5g48030	hypothetical protein LOC100252311	-	6e-28	At5g43130	TAF4 (TBP-ASSOCIATED FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.23	27.5	1612402_at	At5g48030	hypothetical protein LOC100248547	-	1e+0	At3g05870	APC11	O.I.	H.G.	S.X.	Please select
0.19	20.9	1616240_at	At5g48030	hypothetical protein LOC100263190	-	2e-2	At3g05760	nucleic acid binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.14	14.4	1615636_at	At5g48030	hypothetical protein LOC100264871	-	5e+0	At5g63150	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage