Co-expression analysis

Gene ID	PtpAffx.41755.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g48030: GFA2 (GAMETOPHYTIC FACTOR 2) (HF=3e-2)
Module size	6 genes
NF	0.51
%ile	81.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	0.94	PtpAffx.41755.1.S1_at	DN499227	hypothetical protein	-	3e-2	At5g48030	GFA2 (GAMETOPHYTIC FACTOR 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.94	Ptp.3621.1.S1_at	DN492641	-	-	7e-2	At3g60328	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.93	PtpAffx.48049.1.S1_at	DN489796	hypothetical protein	-	5e+0	At5g24410	glucosamine/galactosamine-6-phosphate isomerase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.94	Ptp.2232.1.S1_at	CK089340	-	-	5e+0	At4g11040	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.94	Ptp.607.1.S1_at	CK087237	hypothetical protein	-	1e-17	At5g54680	ILR3 (iaa-leucine resistant3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.94	PtpAffx.16390.1.S1_at	DN496341	-	-	6e+0	At1g29620	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	95.1	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the wheat gene, Ta.19170.1.S1_at, orthologous to the query gene, PtpAffx.41755.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	98.7	Ta.19170.1.S1_at	At5g48030	-	-	6e-1	At3g09590	pathogenesis-related protein, putative	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.27097.1.S1_at	At5g48030	-	-	3e-9	At1g79230	MST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.547.1.S1_at	At5g48030	-	-	2e-5	At3g24170	ATGR1 (glutathione-disulfide reductase)	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.4015.1.A1_at	At5g48030	-	-	1e-1	At2g23320	WRKY15	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.2689.1.S1_at	At5g48030	-	-	1e-9	At3g21140	FMN binding	O.I.	H.G.	S.X.	Please select
0.25	32.1	TaAffx.20050.1.A1_at	At5g48030	-	-	4e-1	At5g47840	AMK2 (Adenosine monophosphate kinase)	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.14582.1.S1_at	At5g48030	-	-	1e-9	At5g53850	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	Ta.7044.1.S1_at	At5g48030	-	-	2e-13	At2g43970	La domain-containing protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	TaAffx.128927.1.A1_at	At5g48030	-	-	3e-2	At4g03020	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.10112.1.S1_at	At5g48030	-	-	4e-12	At3g20650	mRNA capping enzyme family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	TaAffx.15154.1.S1_s_at	At5g48030	-	-	4e-30	At3g21160	mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.2928.1.S1_at	At5g48030	-	-	1e-18	At1g80670	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.6668.1.A1_at	At5g48030	-	-	2e-1	At5g46730	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	Ta.2286.1.S1_at	At5g48030	SGT1-1 protein	-	6e-8	At4g23570	SGT1A	O.I.	H.G.	S.X.	Please select
0.16	18.2	Ta.4729.1.S1_at	At5g48030	-	-	1e-27	At3g01150	PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.15	17.1	Ta.4930.1.S1_at	At5g48030	-	-	9e-35	At4g13930	SHM4 (serine hydroxymethyltransferase 4)	O.I.	H.G.	S.X.	Please select
0.14	15.8	Ta.13425.1.S1_at	At5g48030	-	-	2e-29	At4g08790	nitrilase, putative	O.I.	H.G.	S.X.	Please select
0.14	15.8	Ta.9887.3.A1_x_at	At5g48030	-	-	3e-2	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	O.I.	H.G.	S.X.	Please select
0.12	13.3	Ta.30926.1.S1_at	At5g48030	-	-	1e-6	At1g50410	SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.09	10.4	Ta.28664.1.S1_s_at	At5g48030	-	-	2e+0	At5g50770	AtHSD6 (hydroxysteroid dehydrogenase 6)	O.I.	H.G.	S.X.	Please select
0.08	9.4	Ta.16668.1.S1_x_at	At5g48030	-	-	2e+0	At3g54826	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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