Co-expression analysis

Gene ID	PtpAffx.41755.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g48030: GFA2 (GAMETOPHYTIC FACTOR 2) (HF=3e-2)
Module size	6 genes
NF	0.51
%ile	81.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	0.94	PtpAffx.41755.1.S1_at	DN499227	hypothetical protein	-	3e-2	At5g48030	GFA2 (GAMETOPHYTIC FACTOR 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.94	Ptp.3621.1.S1_at	DN492641	-	-	7e-2	At3g60328	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.93	PtpAffx.48049.1.S1_at	DN489796	hypothetical protein	-	5e+0	At5g24410	glucosamine/galactosamine-6-phosphate isomerase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.94	Ptp.2232.1.S1_at	CK089340	-	-	5e+0	At4g11040	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.94	Ptp.607.1.S1_at	CK087237	hypothetical protein	-	1e-17	At5g54680	ILR3 (iaa-leucine resistant3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.94	PtpAffx.16390.1.S1_at	DN496341	-	-	6e+0	At1g29620	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	95.1	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.4	94.0	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the barley gene, Contig8249_at, orthologous to the query gene, PtpAffx.41755.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	81.4	Contig8249_at	At5g48030	-	-	2e-4	At5g48030	GFA2 (GAMETOPHYTIC FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig19948_at	At5g48030	-	-	9e-2	At2g21385	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig12697_at	At5g48030	-	-	3e-9	At1g52920	GPCR (G PROTEIN COUPLED RECEPTOR)	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig13030_s_at	At5g48030	-	-	3e-8	At5g06530	ABC transporter family protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig12695_at	At5g48030	-	-	2e-3	At2g43560	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig14269_at	At5g48030	-	-	1e-11	At2g21390	coatomer protein complex, subunit alpha, putative	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig13032_at	At5g48030	-	-	5e-8	At3g61570	GDAP1 (GRIP-RELATED ARF-BINDING DOMAIN-CONTAINING ARABIDOPSIS PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig7069_at	At5g48030	-	-	2e-1	At5g03210	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig7860_at	At5g48030	-	-	6e-2	At3g10730	sad1/unc-84-like 2 family protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	Contig4894_at	At5g48030	-	-	1e+0	At1g75717	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	Contig6238_s_at	At5g48030	-	-	1e-7	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	O.I.	H.G.	S.X.	Please select
0.10	8.4	Contig1637_at	At5g48030	1,3-beta glucan endohydrolase precursor	-	1e-2	At5g20560	beta-1,3-glucanase, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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