Co-expression analysis

Gene ID PtpAffx.41755.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g48030: GFA2 (GAMETOPHYTIC FACTOR 2) (HF=3e-2)
Module size 6 genes
NF 0.51
%ile 81.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7192.60.94PtpAffx.41755.1.S1_atDN499227hypothetical protein-3e-2At5g48030GFA2 (GAMETOPHYTIC FACTOR 2)O.I.H.G.S.X.
0.6086.00.94Ptp.3621.1.S1_atDN492641--7e-2At3g60328unknown proteinO.I.H.G.S.X.
0.5784.20.93PtpAffx.48049.1.S1_atDN489796hypothetical protein-5e+0At5g24410glucosamine/galactosamine-6-phosphate isomerase-relatedO.I.H.G.S.X.
0.4774.60.94Ptp.2232.1.S1_atCK089340--5e+0At4g11040protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.3153.70.94Ptp.607.1.S1_atCK087237hypothetical protein-1e-17At5g54680ILR3 (iaa-leucine resistant3)O.I.H.G.S.X.
0.3052.00.94PtpAffx.16390.1.S1_atDN496341--6e+0At1g29620unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.995.1GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.794.7GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.494.0GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g48030, orthologous to the query gene, PtpAffx.41755.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At5g48030834854GFA2 (GAMETOPHYTIC FACTOR 2)encodes a mitochondrially targeted DNAJ protein involved in female gametophyte development.O.I.H.G.S.X.
0.5166.3At3g49990824161-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVAO.I.H.G.S.X.
0.5166.3At4g31790829307diphthine synthase, putative (DPH5)F:methyltransferase activity, diphthine synthase activity;P:peptidyl-diphthamide biosynthetic process from peptidyl-histidine, metabolic process;C:cellular_component unknown;AOMFBPO.I.H.G.S.X.
0.4862.5At4g39280830084phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putativeF:phenylalanine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:phenylalanyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMAFPO.I.H.G.S.X.
0.4862.5At5g50310835096kelch repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVAO.I.H.G.S.X.
0.4761.2At3g20330821577aspartate carabmoyltransferase, chloroplast / aspartate transcarbamylase / ATCase (PYRB)encodes aspartate carbamoyltransferase catalyzing the second step in the de novo pyrimidine ribonucleotide biosynthesisO.I.H.G.S.X.
0.4761.2At2g43770818980transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFOBPAVO.I.H.G.S.X.
0.4761.2At1g80620844401ribosomal protein S15 family proteinF:structural constituent of ribosome;P:translation;C:small ribosomal subunit, ribosome, intracellular, chloroplast;BOPMFO.I.H.G.S.X.
0.4659.8At5g60990836220DEAD/DEAH box helicase, putative (RH10)F:helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:unknown;C:cellular_component unknown;BOMFPAVO.I.H.G.S.X.
0.4659.8At4g32520829387SHM3 (SERINE HYDROXYMETHYLTRANSFERASE 3)F:pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity;P:glycine metabolic process, L-serine metabolic process;C:chloroplast;OBMPFAVO.I.H.G.S.X.
0.4659.8At1g04510839503transducin family protein / WD-40 repeat family proteinF:ubiquitin-protein ligase activity, nucleotide binding;P:response to cadmium ion;C:nucleolus, CUL4 RING ubiquitin ligase complex;MFOBPAO.I.H.G.S.X.
0.4558.3At3g27740822396CARA (CARBAMOYL PHOSPHATE SYNTHETASE A)carbamoyl phosphate synthetase small subunit mRNA (carA),O.I.H.G.S.X.
0.4457.2At1g04170839238EIF2 GAMMAprotein synthesis initiation factor eIF2 gammaO.I.H.G.S.X.
0.4457.2At1g73240843658unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.H.G.S.X.
0.4457.2At2g34970818061eIF4-gamma/eIF5/eIF2-epsilon domain-containing proteinF:binding, transferase activity, translation initiation factor activity, nucleotidyltransferase activity;P:biosynthetic process, regulation of translational initiation;C:unknown;BOMAFPO.I.H.G.S.X.
0.4355.3At4g22720828368glycoprotease M22 family proteinF:endopeptidase activity, metalloendopeptidase activity, zinc ion binding;P:proteolysis;C:cellular_component unknown;OBMFAPO.I.H.G.S.X.
0.4253.9At1g36310840538methyltransferaseF:methyltransferase activity;P:metabolic process;C:unknown;BOMAFPO.I.H.G.S.X.
0.4253.9At2g19540816473transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOPBAO.I.H.G.S.X.
0.4152.4At5g26830832741threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)Encodes a dual-targeted threonyl-tRNA synthetase found in both the chloroplast and mitochondrion.O.I.H.G.S.X.
0.4152.4At5g27540832814MIRO1 (Miro-related GTP-ase 1)Encodes a protein with similarity to GTPases that is localized to the mitochondrion. Involved in embryogenesis, pollen tube growth and required for mitochondrial development.O.I.H.G.S.X.
0.4050.8At2g44020819007mitochondrial transcription termination factor-related / mTERF-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.4050.8At3g16480820896MPPalpha (mitochondrial processing peptidase alpha subunit)F:metalloendopeptidase activity, catalytic activity, zinc ion binding, metal ion binding;P:proteolysis;C:in 8 components;BOMFPAVO.I.H.G.S.X.
0.4050.8At1g26460839187pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POFMO.I.H.G.S.X.
0.4050.8At3g15080820738exonuclease family proteinF:exonuclease activity, nucleic acid binding;P:unknown;C:intracellular;MFOPBO.I.H.G.S.X.
0.4050.8At4g26300828736emb1027 (embryo defective 1027)F:nucleotide binding, aminoacyl-tRNA ligase activity, arginine-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, arginyl-tRNA aminoacylation;C:mitochondrion, chloroplast;OBMAFPVO.I.H.G.S.X.
0.3948.4At5g47320834779RPS19 (RIBOSOMAL PROTEIN S19)Nuclear encoded mitochondrial ribosome subunit.O.I.H.G.S.X.
0.3948.4At1g64550842763ATGCN3member of GCN subfamilyO.I.H.G.S.X.
0.3948.4At3g02220821238unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBAO.I.H.G.S.X.
0.3948.4At4g18040827529EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E)eIF4E protein. The cum1 mutation affects the local spreading of CMV within the inoculated leaf, delaying accumulation of cucumber mosaic virus coat protein.O.I.H.G.S.X.
0.3948.4At4g19210827661ATRLI2member of RLI subfamilyO.I.H.G.S.X.
0.3846.7At1g09760837505U2A' (U2 small nuclear ribonucleoprotein A)F:protein binding;P:nuclear mRNA splicing, via spliceosome, response to cold;C:in 6 components;MBOFPVO.I.H.G.S.X.
0.3846.7At4g14000827036unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MFOPBO.I.H.G.S.X.
0.3846.7At2g31240817681tetratricopeptide repeat (TPR)-containing proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MBOFPAVO.I.H.G.S.X.
0.3745.0At1g31660840053-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBO.I.H.G.S.X.
0.3745.0At1g18070838387EF-1-alpha-related GTP-binding protein, putativeF:translation factor activity, nucleic acid binding, GTP binding, translation release factor activity, GTPase activity;P:translational termination;C:vacuole;BMOFPAO.I.H.G.S.X.
0.3643.6At4g28200828935-F:molecular_function unknown;P:RNA processing;C:intracellular;FMOPO.I.H.G.S.X.
0.3541.6At1g55900842040TIM50component of a translocase in the mitochondrial inner membraneO.I.H.G.S.X.
0.3541.6At5g04280830307glycine-rich RNA-binding proteinF:RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:nucleolus;MPFOBVAO.I.H.G.S.X.
0.3541.6At1g73180843652eukaryotic translation initiation factor-relatedF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MFOPBO.I.H.G.S.X.
0.3541.6At1g55890842039pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:mitochondrion;POMFBAO.I.H.G.S.X.
0.3541.6At3g14390820660diaminopimelate decarboxylase, putative / DAP carboxylase, putativeF:diaminopimelate decarboxylase activity;P:lysine biosynthetic process via diaminopimelate;C:chloroplast;BOMPFAVO.I.H.G.S.X.
0.3541.6At5g67220836857nitrogen regulation family proteinF:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:regulation of nitrogen utilization, oxidation reduction, tRNA processing, metabolic process;C:mitochondrion;BOMFPAO.I.H.G.S.X.
0.3439.8At4g39520830106GTP-binding protein, putativeF:GTP binding;P:unknown;C:intracellular;BOMAFPO.I.H.G.S.X.
0.3439.8At5g05000830382TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34)Outer membrane protein that may function in import of nuclear encoded proteins into the chloroplast.O.I.H.G.S.X.
0.3439.8At1g11780837723oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPO.I.H.G.S.X.
0.3338.1At3g57290824896EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E)Encodes a protein that is found in not only the eif3 complex but also in association with subunits of the COP9 signalosome. eIF3e appears to be subjected to proteasome-dependent degradation that requires the PCI domain of eIF3e. The level of eIF3e present in cells appears to affect the rate of translation.O.I.H.G.S.X.
0.3338.1At4g10760826670MTA (MRNA ADENOSINE METHYLASE)F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:embryonic development ending in seed dormancy, mRNA methylation;C:nuclear speck, chloroplast;MOBPFAVO.I.H.G.S.X.
0.3338.1At1g16870838258mitochondrial 28S ribosomal protein S29-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPO.I.H.G.S.X.
0.3338.1At1g03860839228ATPHB2 (PROHIBITIN 2)prohibitin 2O.I.H.G.S.X.
0.3235.7At4g31180829246aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putativeF:aspartate-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, nucleic acid binding, ATP binding;P:response to cadmium ion, aspartyl-tRNA aminoacylation;C:chloroplast, cytoplasm;BOMFAPO.I.H.G.S.X.
0.3133.8At3g07300819918eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinF:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAPO.I.H.G.S.X.
0.3032.1At2g31740817731methyltransferaseF:methyltransferase activity;P:metabolic process;C:unknown;OBMPFAO.I.H.G.S.X.
0.3032.1At3g04600819617tRNA synthetase class I (W and Y) family proteinF:tryptophan-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:tryptophanyl-tRNA aminoacylation, tRNA aminoacylation for protein translation;C:cytosol;BOAMFPVO.I.H.G.S.X.
0.3032.1At3g57610824930ADSS (ADENYLOSUCCINATE SYNTHASE)encoding adenylosuccinate synthetase (AdSS), the enzyme involved in the first step of the formation of the purine nucleotide AMP (conversion of IMP to adenylo-succinate)O.I.H.G.S.X.
0.3032.1At3g59990825169MAP2B (METHIONINE AMINOPEPTIDASE 2B)Encodes a MAP2 like methionine aminopeptidaseO.I.H.G.S.X.
0.2930.3At3g0963082012060S ribosomal protein L4/L1 (RPL4A)F:structural constituent of ribosome;P:translation;C:in 9 components;MOAFPBO.I.H.G.S.X.
0.2930.3At4g30890829213UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24)Encodes a ubiquitin-specific protease.O.I.H.G.S.X.
0.2830.3At1g30580839938GTP bindingF:GTP binding;P:response to cadmium ion;C:intracellular;OBMFAPO.I.H.G.S.X.
0.2830.3At5g0287083175660S ribosomal protein L4/L1 (RPL4D)F:structural constituent of ribosome;P:translation;C:in 8 components;MOAFPBO.I.H.G.S.X.
0.2830.3At1g04190839442tetratricopeptide repeat (TPR)-containing proteinF:binding;P:biological_process unknown;C:cellular_component unknown;OBMPFAO.I.H.G.S.X.
0.2830.3At5g20920832216EIF2 BETAprotein synthesis initiation factor eIF2 betaO.I.H.G.S.X.
0.2726.2At2g25570817096bindingF:binding;P:biological_process unknown;C:unknown;BOMPVFO.I.H.G.S.X.
0.2726.2At5g64960836620CDKC2 (Cyclin dependent kinase group C 2)Encodes CDKC;2, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes. Also regulates plant growth and development. Co-localizes with spliceosomal components in a manner dependent on the transcriptional status of the cells and on CDKC2-kinase activity. Expression of CDKC2 modifies the location of spliceosomal components.O.I.H.G.S.X.
0.2726.2At1g10840837627TIF3H1Encodes eukaryotic initiation factor 3H1 subunit (TIF3H1).O.I.H.G.S.X.
0.2624.4At5g52470835323FIB1 (FIBRILLARIN 1)encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.1f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated.O.I.H.G.S.X.
0.2624.4At4g26310828737elongation factor P (EF-P) family proteinF:translation elongation factor activity;P:translational elongation;C:unknown;BOPAO.I.H.G.S.X.
0.2522.6At1g7405084374460S ribosomal protein L6 (RPL6C)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, intracellular, plasma membrane, membrane;MOFPAO.I.H.G.S.X.
0.2420.7At1g55150841958DEAD box RNA helicase, putative (RH20)F:helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAVO.I.H.G.S.X.
0.2420.7At2g29080817456ftsh3 (FtsH protease 3)encodes an FtsH protease that is localized to the mitochondrionO.I.H.G.S.X.
0.2319.3At5g49510835011PDF3 (PREFOLDIN 3)F:unfolded protein binding;P:protein folding;C:prefoldin complex;MFOPO.I.H.G.S.X.
0.2217.5At4g33250829461EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K)Encodes initiation factor 3k (EIF3k).O.I.H.G.S.X.
0.2115.8At3g58560825025endonuclease/exonuclease/phosphatase family proteinF:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;MPOFBO.I.H.G.S.X.
0.1710.2At5g64830836606programmed cell death 2 C-terminal domain-containing proteinF:molecular_function unknown;P:apoptosis;C:cytoplasm;MFOPO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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