Co-expression analysis

Gene ID	PtpAffx.41560.2.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g62380: ANAC101 (ARABIDOPSIS NAC-DOMAIN PROTEIN 101) (HF=3e+0)
Module size	10 genes
NF	0.30
%ile	53.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	0.86	PtpAffx.41560.2.A1_at	BP931723	hypothetical protein	-	3e+0	At5g62380	ANAC101 (ARABIDOPSIS NAC-DOMAIN PROTEIN 101)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.89	PtpAffx.221590.1.S1_at	pmrna38551	hypothetical protein	-	6e-1	At5g49640	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.89	PtpAffx.62759.1.A1_at	CV267227	hypothetical protein	-	5e+0	At4g16566	histidine triad family protein / HIT family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.91	PtpAffx.88966.1.A1_a_at	CV256291	hypothetical protein	-	5e-1	At4g09775	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.92	PtpAffx.10711.1.S1_at	CV240623	hypothetical protein	-	1e-4	At3g25870	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.88	PtpAffx.204573.1.S1_at	pmrna8981	hypothetical protein	-	4e-67	At2g21270	ubiquitin fusion degradation UFD1 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.91	PtpAffx.34427.1.A1_at	CV274259	hypothetical protein	-	2e+0	At4g10270	wound-responsive family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.87	Ptp.1504.2.S1_at	CV247782	-	-	0	At4g21710	NRPB2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.89	PtpAffx.208738.1.S1_s_at	pmrna17323	magnesium transporter	-	8e-47	At5g64560	magnesium transporter CorA-like family protein (MRS2-2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.89	PtpAffx.208868.1.S1_s_at	pmrna17574	hypothetical protein	-	2e-168	At2g01690	binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	94.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.9	92.5	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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