Co-expression analysis

Gene ID	PtpAffx.4136.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g21105: cytochrome-c oxidase/ electron carrier (HF=8e-8)
Module size	7 genes
NF	0.52
%ile	82.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	0.97	PtpAffx.4136.1.S1_at	CV248527	hypothetical protein	-	8e-8	At4g21105	cytochrome-c oxidase/ electron carrier	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.97	Ptp.6243.1.S1_at	CK111229	hypothetical protein	-	2e-91	At3g08590	2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.97	PtpAffx.78971.1.S1_at	DN491673	hypothetical protein	-	1e-7	At3g15150	zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.97	PtpAffx.59364.1.S1_s_at	CA927945	hypothetical protein	-	8e-15	At3g44330	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	Ptp.2346.1.S1_at	CK093262	hypothetical protein	-	1e-23	At3g02360	6-phosphogluconate dehydrogenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.97	Ptp.532.1.S1_at	CK088410	hypothetical protein	-	1e-4	At1g26850	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.97	Ptp.929.1.S1_at	CK100278	hypothetical protein	-	5e-1	At1g54140	TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.8	99.1	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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