Co-expression analysis

Gene ID	PtpAffx.41318.1.S1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g65780: ATBCAT-5 (HF=3e-53)
Module size	16 genes
NF	0.37
%ile	63.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	93.8	0.95	PtpAffx.41318.1.S1_a_at	CV265728	hypothetical protein	-	3e-53	At5g65780	ATBCAT-5	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.95	PtpAffx.158194.1.A1_at	BP934630	hypothetical protein	-	2e+0	At5g06770	KH domain-containing protein / zinc finger (CCCH type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	PtpAffx.22672.1.S1_at	DN491862	hypothetical protein	-	4e-42	At5g47790	forkhead-associated domain-containing protein / FHA domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.96	PtpAffx.201628.1.S1_at	pmrna3226	hypothetical protein	-	8e-2	At1g06060	RanBPM-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.96	Ptp.5251.1.S1_s_at	CA924854	hypothetical protein	-	6e-3	At3g04710	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.96	PtpAffx.100452.1.S1_at	CK095732	hypothetical protein	-	1e-7	At1g68310	vacuolar sorting signal binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.97	Ptp.5550.1.S1_at	CV254630	hypothetical protein	-	1e-42	At4g36960	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.95	PtpAffx.4950.1.S1_at	AJ779286	hypothetical protein	-	2e-54	At1g36730	eukaryotic translation initiation factor 5, putative / eIF-5, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.96	PtpAffx.162072.1.S1_s_at	AJ771589	hypothetical protein	-	4e-11	At5g15440	EDL1 (EID1-like 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.97	Ptp.424.2.A1_s_at	CV240371	global transcription factor group	-	7e-49	At4g08350	GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.97	PtpAffx.11443.1.S1_a_at	CV242709	hypothetical protein	-	1e-18	At2g39760	BPM3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.97	PtpAffx.32449.1.A1_at	CV232058	hypothetical protein	-	1e-29	At1g21080	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.97	Ptp.1985.2.A1_s_at	CV259663	hypothetical protein	-	3e-20	At5g23090	NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.96	Ptp.7216.3.S1_s_at	CX176163	hypothetical protein	-	3e-1	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.96	Ptp.6543.1.S1_at	CV233854	hypothetical protein	-	2e-121	At4g15900	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.96	Ptp.6005.1.S1_at	DN483642	hypothetical protein	-	1e-44	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	95.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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