Co-expression analysis

Gene ID	PtpAffx.40711.1.A1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g53040: unknown protein (HF=3e-4)
Module size	7 genes
NF	0.52
%ile	82.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.93	PtpAffx.40711.1.A1_a_at	DN496741	hypothetical protein	-	3e-4	At1g53040	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.94	PtpAffx.76403.1.A1_at	CV232143	hypothetical protein	-	3e+0	At4g19035	LCR7 (Low-molecular-weight cysteine-rich 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.94	PtpAffx.154196.1.A1_at	CV264050	hypothetical protein	-	2e-21	At4g26510	ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.95	PtpAffx.38086.1.A1_s_at	CV226853	hypothetical protein	-	2e-1	At1g24120	ARL1 (ARG1-LIKE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.97	PtpAffx.34708.3.S1_s_at	CF237092	hypothetical protein	-	4e+0	At2g16620	protein kinase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.94	PtpAffx.63208.1.A1_at	CV249869	hypothetical protein	-	3e-27	At1g09150	pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.97	PtpAffx.149830.1.S1_at	BU895366	hypothetical protein	-	2e-70	At1g08040	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	97.6	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.4	82.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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