Co-expression analysis

Gene ID	PtpAffx.4020.2.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g31780: - (HF=9e-39)
Module size	6 genes
NF	0.38
%ile	65.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	80.5	0.96	PtpAffx.4020.2.S1_s_at	CX659915	hypothetical protein	-	9e-39	At1g31780	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.97	PtpAffx.206230.1.S1_at	pmrna12364	hypothetical protein	-	4e-20	At2g36305	FACE2 (FARNESYLATED PROTEIN-CONVERTING ENZYME 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.97	Ptp.4755.1.S1_at	BU895769	hypothetical protein	-	4e-1	At1g14450	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.97	PtpAffx.4546.1.S1_at	CV260331	hypothetical protein	-	8e-113	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.97	PtpAffx.155384.1.A1_at	CK097708	hypothetical protein	-	1e-13	At5g61450	2-phosphoglycerate kinase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.97	PtpAffx.206449.1.S1_s_at	pmrna12797	hypothetical protein	-	2e-160	At3g11910	UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.0	98.4	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.9	98.0	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
6.1	97.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.4	94.0	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.4	94.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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