Co-expression analysis

Gene ID PtpAffx.40088.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g50590: nucleotide binding (HF=6e-58)
Module size 6 genes
NF 0.51
%ile 82.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4268.60.96PtpAffx.40088.1.A1_atCA927295--6e-58At3g50590nucleotide bindingO.I.H.G.S.X.
0.6791.10.97PtpAffx.202165.1.S1_atpmrna4331hypothetical protein-1e-35At3g60860guanine nucleotide exchange family proteinO.I.H.G.S.X.
0.6187.00.97PtpAffx.159171.1.S1_atCA821479hypothetical protein-2e-158At1g79990protein binding / structural moleculeO.I.H.G.S.X.
0.5582.20.97PtpAffx.217260.1.S1_s_atpmrna32449hypothetical protein-2e-97At2g07360SH3 domain-containing proteinO.I.H.G.S.X.
0.5078.60.97PtpAffx.162976.1.S1_atBU879300hypothetical protein-2e-27At5g37510EMB1467 (embryo defective 1467)O.I.H.G.S.X.
0.2747.10.97PtpAffx.157141.1.S1_s_atCK106059hypothetical protein-5e-31At1g34130STT3B (staurosporin and temperature sensitive 3-like b)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.694.5GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.691.3GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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