Co-expression analysis

Gene ID	PtpAffx.3977.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g52040: ATRSP41 (HF=2e-18)
Module size	6 genes
NF	0.62
%ile	91.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.98	PtpAffx.3977.1.S1_s_at	CA821307	hypothetical protein	-	2e-18	At5g52040	ATRSP41	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.97	PtpAffx.132468.1.S1_s_at	DN498520	-	-	4e-1	At3g12140	emsy N terminus domain-containing protein / ENT domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.98	PtpAffx.61544.1.A1_at	CA931045	hypothetical protein	-	4e-19	At3g59380	FTA (FARNESYLTRANSFERASE A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.97	PtpAffx.156707.1.S1_s_at	BU873655	hypothetical protein	-	4e-4	At2g03110	RNA binding / nucleic acid binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.98	PtpAffx.136933.1.S1_s_at	AI166650	hypothetical protein	-	3e-5	At1g64350	SEH1H	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.98	PtpAffx.163432.1.S1_s_at	BU812071	hypothetical protein	-	6e-58	At3g62120	tRNA synthetase class II (G, H, P and S) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	95.3	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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