Co-expression analysis

Gene ID PtpAffx.38755.2.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g49870: ATARLA1C (ADP-ribosylation factor-like A1C) (HF=2e-56)
Module size 7 genes
NF 0.58
%ile 88.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6187.00.95PtpAffx.38755.2.S1_s_atCV252052hypothetical protein-2e-56At3g49870ATARLA1C (ADP-ribosylation factor-like A1C)O.I.H.G.S.X.
0.7794.90.95PtpAffx.1601.13.S1_a_atCV240068hypothetical protein-5e+0At5g44306unknown proteinO.I.H.G.S.X.
0.6791.10.95PtpAffx.5090.1.A1_atCV267261hypothetical protein-1e-1At3g09810isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putativeO.I.H.G.S.X.
0.6086.00.94PtpAffx.147676.1.A1_atCV230317hypothetical protein-3e-32At4g30600signal recognition particle receptor alpha subunit family proteinO.I.H.G.S.X.
0.5683.90.94PtpAffx.222478.1.S1_atpmrna39929hypothetical protein-1e-48At1g67190F-box family proteinO.I.H.G.S.X.
0.3863.70.95Ptp.4510.1.S1_atCV261413hypothetical protein-1e-8At1g14140mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.3153.70.96PtpAffx.4085.4.S1_atCV244302hypothetical protein-3e-71At3g59350serine/threonine protein kinase, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.794.7GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.293.5GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.590.9GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1607646_at, orthologous to the query gene, PtpAffx.38755.2.S1_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8494.81607646_atAt3g49870hypothetical protein LOC100244584-7e-59At3g49870ATARLA1C (ADP-ribosylation factor-like A1C)O.I.H.G.S.X.
0.5679.41609620_atAt3g49870--7e+0At5g51845-O.I.H.G.S.X.
0.5173.21621288_atAt3g49870hypothetical protein LOC100252015-2e+0At5g50030invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.4666.51607743_atAt3g49870hypothetical protein LOC100252303-5e-12At1g29150ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)O.I.H.G.S.X.
0.4666.51619148_atAt3g49870hypothetical protein LOC100263958-6e-2At3g12130KH domain-containing protein / zinc finger (CCCH type) family proteinO.I.H.G.S.X.
0.4464.11613730_atAt3g49870hypothetical protein LOC100264670-2e-43At2g26460RED family proteinO.I.H.G.S.X.
0.4464.11614091_atAt3g49870hypothetical protein LOC100253367-4e-12At5g25230elongation factor Tu family proteinO.I.H.G.S.X.
0.4361.51606771_atAt3g49870--3e-39At4g00660DEAD/DEAH box helicase, putativeO.I.H.G.S.X.
0.4260.11614002_atAt3g49870hypothetical protein LOC100242874-6e-3At2g14835zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4057.71612222_atAt3g49870hypothetical protein LOC100244118-1e-3At1g16560Per1-like family proteinO.I.H.G.S.X.
0.3853.61613361_s_atAt3g49870hypothetical protein LOC100242707-4e-2At5g55750hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.3650.71618602_atAt3g49870hypothetical protein LOC100267246-4e-7At1g79650RAD23O.I.H.G.S.X.
0.3446.81615027_s_atAt3g49870hypothetical protein LOC100246785-1e-15At2g32080PUR ALPHA-1O.I.H.G.S.X.
0.3345.71613303_atAt3g49870similar to plectin-related-3e-16At2g26770plectin-relatedO.I.H.G.S.X.
0.3243.11618548_atAt3g49870hypothetical protein LOC100246661-2e-20At2g06990HEN2 (hua enhancer 2)O.I.H.G.S.X.
0.3141.31620963_atAt3g49870hypothetical protein LOC100247592-7e-49At5g58230MSI1 (MULTICOPY SUPRESSOR OF IRA1)O.I.H.G.S.X.
0.2837.71606841_s_atAt3g49870similar to UBC13A/UBC35 (UBIQUITIN-CONJUGATING ENZYME35); protein binding / ubiquitin-protein ligase-1e-62At1g78870UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)O.I.H.G.S.X.
0.2837.71612043_atAt3g49870hypothetical protein LOC100256975-5e-41At5g62610basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.2632.01622482_atAt3g49870hypothetical protein LOC100265772-3e-11At1g76940RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays



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